Literature DB >> 2010918

A nuclear magnetic resonance study of the hydrogen-exchange behaviour of lysozyme in crystals and solution.

T G Pedersen1, B W Sigurskjold, K V Andersen, M Kjaer, F M Poulsen, C M Dobson, C Redfield.   

Abstract

Amide hydrogen/deuterium exchange behaviour has been studied for all of the peptide amides of hen lysozyme by means of two-dimensional n.m.r. spectroscopy. The amides have been grouped into four categories on the basis of their rates of exchange in solution at pH 4.2 and 7.5. The distribution of the amides into the different categories has been examined in the light of the crystallographic structural information, considering the type of secondary structure, the nature of hydrogen bonding and the distance from the protein surface. None of these features was found to determine uniquely the pattern of hydrogen exchange rates within the protein. The exchange behaviour of the individual amides could, however, in general be rationalized by a combination of these features. Hydrogen exchange was also monitored in both tetragonal and triclinic crystals of lysozyme, by allowing exchange to take place in the crystals prior to dissolution and recording of n.m.r. spectra under conditions where further exchange was minimized. This enabled direct comparison to be made of the exchange behaviour in the crystals and solution. A reduction in exchange rate was observed in the crystalline state relative to solution for a substantial number of amides and distinct differences between exchange in the different crystals could be observed. These differences between the solution and the different crystal states do not, however, correlate in a simple manner with proximity to intermolecular contacts in the crystals. However, the existence of these contacts, which are on the surface of the protein molecule, have a profound effect on the exchange of amides in the interior of the protein. The results indicate that the spectrum of fluctuations giving rise to hydrogen exchange may be significantly altered by the intermolecular interactions present within the crystalline state.

Entities:  

Mesh:

Substances:

Year:  1991        PMID: 2010918     DOI: 10.1016/0022-2836(91)90722-i

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  27 in total

1.  Changes in protein conformational mobility upon activation of extracellular regulated protein kinase-2 as detected by hydrogen exchange.

Authors:  A N Hoofnagle; K A Resing; E J Goldsmith; N G Ahn
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Orientational order and dynamics of hydration water in a single crystal of bovine pancreatic trypsin inhibitor.

Authors:  K Venu; L A Svensson; B Halle
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

3.  Atom depth as a descriptor of the protein interior.

Authors:  Alessandro Pintar; Oliviero Carugo; Sándor Pongor
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

4.  Dynamic nuclear polarization-enhanced solid-state NMR spectroscopy of GNNQQNY nanocrystals and amyloid fibrils.

Authors:  Galia T Debelouchina; Marvin J Bayro; Patrick C A van der Wel; Marc A Caporini; Alexander B Barnes; Melanie Rosay; Werner E Maas; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

5.  Temperature dependence of 1H chemical shifts in proteins.

Authors:  N J Baxter; M P Williamson
Journal:  J Biomol NMR       Date:  1997-06       Impact factor: 2.835

6.  Mass spectrometry of ribosomes and ribosomal subunits.

Authors:  D R Benjamin; C V Robinson; J P Hendrick; F U Hartl; C M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

Review 7.  Protein complexes studied by NMR spectroscopy.

Authors:  A J Wand; S W Englander
Journal:  Curr Opin Biotechnol       Date:  1996-08       Impact factor: 9.740

Review 8.  Mechanisms and uses of hydrogen exchange.

Authors:  S W Englander; T R Sosnick; J J Englander; L Mayne
Journal:  Curr Opin Struct Biol       Date:  1996-02       Impact factor: 6.809

9.  Refined solution structure and backbone dynamics of 15N-labeled C12A-p8MTCP1 studied by NMR relaxation.

Authors:  P Barthe; L Chiche; N Declerck; M A Delsuc; J F Lefèvre; T Malliavin; J Mispelter; M H Stern; J M Lhoste; C Roumestand
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

10.  Local breathing and global unfolding in hydrogen exchange of barnase and its relationship to protein folding pathways.

Authors:  J Clarke; A M Hounslow; M Bycroft; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1993-11-01       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.