| Literature DB >> 34926051 |
Abstract
In neuro-oncology, magnetic resonance imaging (MRI) is a critically important, non-invasive radiologic assessment technique for brain tumor diagnosis, especially glioma. Deep learning improves MRI image characterization and interpretation through the utilization of raw imaging data and provides unprecedented enhancement of images and representation for detection and classification through deep neural networks. This systematic review and quality appraisal method aim to summarize deep learning approaches used in neuro-oncology imaging to aid healthcare professionals. Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines, a total of 20 low-risk studies on the established use of deep learning models to identify glioma genetic mutations and grading were selected, based on a Quality Assessment of Diagnostic Accuracy Studies 2 score of ≥9. The included studies provided the deep learning models used alongside their outcome measures, the number of patients, and the molecular markers for brain glioma classification. In 19 studies, the researchers determined that the deep learning model improved the clinical outcome and treatment protocol in patients with a brain tumor. In five studies, the authors determined the sensitivity of the deep learning model used, and in four studies, the authors determined the specificity of the models. Convolutional neural network models were used in 16 studies. In eight studies, the researchers examined glioma grading by using different deep learning models compared with other models. In this review, we found that deep learning models significantly improve the diagnostic and classification accuracy of brain tumors, particularly gliomas without the need for invasive methods. Most studies have presented validated results and can be used in clinical practice to improve patient care and prognosis.Entities:
Keywords: accuracy; artificial intelligence; deep learning; glioma classification; neuro imagining; neuro-oncology
Year: 2021 PMID: 34926051 PMCID: PMC8671075 DOI: 10.7759/cureus.19580
Source DB: PubMed Journal: Cureus ISSN: 2168-8184
Figure 1PRISMA flowchart showing the number of studies retrieved at each stage of the systematic review.
PRISMA, Preferred Reporting Items for Systematic Reviews and Meta-Analyses.
Description of deep learning models used and comparison of their outcome measures in neuro-oncology patients.
2D: two-dimensional; 2D-DOST: two-dimensional discrete orthonormal Stockwell transform; 3D: three-dimensional; ANN: artificial neural networks; AUC: area under the curve; CNN: convolutional neural network; DL: deep learning; GB: gradient boosting; HGGs: high-grade gliomas; IDH: isocitrate dehydrogenase; KNN: k-nearest neighbor; LGGs: low-grade gliomas; MGMT: O6-methylguanine-DNA methyltransferase; MLP: multilayer perceptron; NPV: negative predictive value; PPV: positive predictive value; RF: random forest; SVM: support vector machine; T2w: T2-weighted; TS: true segmentation; VGG: visual geometry group; Wndchrm: weighted neighbor distance using a compound hierarchy of algorithms representing morphology.
| No. | Author | Year | Study markers | Best performing DL model used | Sample size | Other DL models used | Outcome measures | Values (DL model) |
| 1 | Akkus et al. [ | 2015 | Preoperative patients with LGGs segmentation | 2D and 3D segmentation | 30 | STAPLE TS | 3D segmentation | |
| Dice index | 0.89 | |||||||
| Sensitivity | 0.91 | |||||||
| Specificity | 0.99 | |||||||
| 2D segmentation | ||||||||
| Dice index | 0.9 | |||||||
| Sensitivity | 0.92 | |||||||
| Specificity | 0.99 | |||||||
| 2 | Bangalore et al. [ | 2020 | Predict IDH mutation status | T2-Net | 214 patients (94 IDH mutated and 120 IDH wild-type) | T2W image only network (T2-Net) | T2-net | |
| Accuracy | 97.14% | |||||||
| Sensitivity | 0.97 | |||||||
| Specificity | 0.98 | |||||||
| PPV | 0.98 | |||||||
| NPV | 0.97 | |||||||
| AUC | 0.98 | |||||||
| Multi-contrast network (TS-Net) | TS-net | |||||||
| Accuracy | 97.12% | |||||||
| Sensitivity | 0.98 | |||||||
| Specificity | 0.97 | |||||||
| PPV | 0.97 | |||||||
| NPV | 0.97 | |||||||
| AUC | 0.99 | |||||||
| 3 | Díaz-Pernas et al. [ | 2021 | Segmentation and classification of brain tumors (meningioma, glioma, and pituitary tumors) | Deep CNN with a multiscale approach | 233 | Classic ML and DL methods | Accuracy | 97.30% |
| 4 | Naser et al. [ | 2020 | Grade LGGs (grade II vs. III) and tumor detection by segmentation | DL model | 110 | Detection model | Accuracy | 0.92 |
| Sensitivity | 0.92 | |||||||
| Specificity | 0.92 | |||||||
| Grading model | Accuracy | 0.89 | ||||||
| Sensitivity | 0.87 | |||||||
| Specificity | 0.92 | |||||||
| 5 | Zhuge et al. [ | 2020 | Glioma classification | 3DConvNet | 285 | 2D Mask R-CNN | Accuracy | 96.30% |
| Sensitivity | 93.50% | |||||||
| Specificity | 97.20% | |||||||
| 3DConvNet | Accuracy | 97.10% | ||||||
| Sensitivity | 94.70% | |||||||
| Specificity | 96.80% | |||||||
| 6 | Nalawade et al. [ | 2019 | Predict IDH mutation status | DenseNet-161 | 260 patients (120 HGGs and 140 LGGs) | Inception-v4 | Inception-v4 slice-wise | |
| Accuracy | 76.10% | |||||||
| Precision | 59.40% | |||||||
| Sensitivity | 59.20% | |||||||
| Specificity | 84.50% | |||||||
| F1 score | 58.20% | |||||||
| Inception-v4 subject-wise | ||||||||
| Accuracy | 64.20% | |||||||
| Precision | 65.80% | |||||||
| Sensitivity | 65.10% | |||||||
| Specificity | 65.10% | |||||||
| F1 score | 64.00% | |||||||
| ResNet-50 | ResNet-50 slice-wise | |||||||
| Accuracy | 89.70% | |||||||
| Precision | 79.30% | |||||||
| Sensitivity | 81.70% | |||||||
| Specificity | 94.10% | |||||||
| F1 score | 81.30% | |||||||
| ResNet-50 subject-wise | ||||||||
| Accuracy | 81.40% | |||||||
| Precision | 81.50% | |||||||
| Sensitivity | 81.50% | |||||||
| Specificity | 81.50% | |||||||
| F1 score | 81.40% | |||||||
| DenseNet-161 | DenseNet-161 slice-wise | |||||||
| Accuracy | 90.50% | |||||||
| Precision | 79.90% | |||||||
| Sensitivity | 83.10% | |||||||
| Specificity | 94.80% | |||||||
| F1 score | 81.30% | |||||||
| DenseNet-161 subject-wise | ||||||||
| Accuracy | 83.80% | |||||||
| Precision | 84.10% | |||||||
| Sensitivity | 83.50% | |||||||
| Specificity | 83.50% | |||||||
| F1 score | 83.50% | |||||||
| 7 | Gutta et al. [ | 2021 | Predict glioma grade | CNN | 237 | CNN trained with radiomic features alone | Accuracy CNN | 87% |
| GB | Accuracy GB | 64% | ||||||
| RF | Accuracy RF | 58% | ||||||
| SVM | Accuracy SVM | 56% | ||||||
| 8 | Latif et al. [ | 2021 | Glioma tumor detection | CNN | 65 patients (26 LGGs and 39 HGGs) | MLP classifier | Accuracy | 98.50% |
| KNN classifier | Accuracy | 97.96% | ||||||
| SVM classifier | Accuracy | 90.04% | ||||||
| 9 | Lu et al. [ | 2020 | Glioma classification | Modified ResNet50 | 193 cases | Modified ResNet | Accuracy | 80.11% |
| CNN | Accuracy | 75.43% | ||||||
| DenseNet | Accuracy | 67.55% | ||||||
| MLP | Accuracy | 63.58% | ||||||
| ResNet50 | Accuracy | 78.59% | ||||||
| 10 | Ahammed Muneer et al. [ | 2019 | Glioma grade identification (LGG, oligodendroglioma, anaplastic glioma, and glioblastoma multiforme) | VGG-19 CNN | Wndchrm classifier | Accuracy | 92.86% | |
| VGG-19 | Accuracy | 98.25% | ||||||
| 11 | Mzoughi et al. [ | 2020 | Glioma classification into LGG and HGG | 3D-CNN | 284 | 2D-CNN | Accuracy | 96.49% |
| 12 | Yang et al. [ | 2018 | Glioma classification | CNN (GoogLeNet) | 113 patients (53 LGGs and 61 HGGs) | AlexNet | Validation accuracy | 0.866 |
| Test accuracy | 0.855 | |||||||
| Test AUC | 0.894 | |||||||
| GoogLeNet | Validation accuracy | 0.867 | ||||||
| Test accuracy | 0.909 | |||||||
| Test AUC | 0.939 | |||||||
| 13 | Khawaldeh et al. [ | 2017 | Glioma classification | Modified AlexNet | 109 | ConvNet-3 | Accuracy | 85.71% |
| Modified AlexNet | Accuracy | 91.16% | ||||||
| 14 | Chang et al. [ | 2018 | Predict IDH mutation status | Residual CNN (ResNet) with age incorporation | 496 | Residual CNN (ResNet) with age incorporation | Training accuracy | 87.30% |
| Validation accuracy | 87.60% | |||||||
| Testing accuracy | 89.10% | |||||||
| Residual CNN (ResNet) without age incorporation | Training accuracy | 82.80% | ||||||
| Validation accuracy | 83.00% | |||||||
| Testing accuracy | 85.70% | |||||||
| 15 | Chang et al. [ | 2018 | Predict MGMT promoter methylation status, IDH1 mutation status, and 1p/19q codeletion status | CNN | 259 patients | Predict MGMT promoter methylation status | Accuracy | 83.00% |
| AUC | 0.81 | |||||||
| Predict IDH1 mutation status | Accuracy | 94.00% | ||||||
| AUC | 0.91 | |||||||
| 1p/19q codeletion status | Accuracy | 92.00% | ||||||
| AUC | 0.88 | |||||||
| 16 | Levner et al. [ | 2009 | Predict MGMT promoter methylation status | 59 | 2D-DOST + ANN | Accuracy | 87.70% | |
| 17 | Korfiatis et al. [ | 2017 | Predict MGMT promoter methylation status (no tumor, methylated MGMT, or non-methylated MGMT) | ResNet50 | 155 patients (66 methylated and 89 unmethylated tumors) | ResNet50 | Test accuracy | 94.40% |
| ResNet34 | Test accuracy | 80.72% | ||||||
| ResNet18 | Test accuracy | 76.75% | ||||||
| 18 | Ge et al. [ | 2018 | Glioma classification (LGGs vs. HGGs) and 1p19q codeletion | Deep CNN | 285 | Deep CNN | Training accuracy | 91.93% |
| Validation accuracy | 93.25% | |||||||
| Test accuracy | 90.87% | |||||||
| Deep CNN | 159 | Deep CNN 1p19q codeletion | Training Accuracy | 97.11% | ||||
| Validation accuracy | 90.91% | |||||||
| Test accuracy | 89.39% | |||||||
| 19 | Rehman et al. [ | 2020 | Classification of brain tumors (meningioma, glioma, and pituitary tumors) | CNN (fine-tuned VGG-16) | 233 | Fine-tuned GoogLeNet | Accuracy | 98.69% |
| Fine-tuned AlexNet | Accuracy | 97.39% | ||||||
| Fine-tuned VGG-16 | Accuracy | 98.04% | ||||||
| 20 | Matsui et al. [ | 2020 | Prediction of LGG molecular subtype | DL model | 217 patients with LGG | Prediction of LGG molecular subtype | Accuracy training | 96.60% |
| Accuracy test | 68.70% | |||||||