| Literature DB >> 34838011 |
Jian Song1, Shuyong Yu2, Dunjing Zhong3, Weizhong Yang4, Zhen Jia5, Guihong Yuan3, Ping Li3, Ronglin Zhang3, Yini Li3, Guobing Zhong6, Zhaowei Chen3.
Abstract
BACKGROUND: The present study aimed to identify a specific circular RNA (circRNA) for early diagnosis of gastric cancer (GC).Entities:
Keywords: Circular RNA; Gastric cancer; hsa_circ_000780
Mesh:
Substances:
Year: 2021 PMID: 34838011 PMCID: PMC8627072 DOI: 10.1186/s12920-021-01096-6
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
Patient features
| Characteristic | CNAG ( | CAG ( | EGC ( | AGC ( |
|---|---|---|---|---|
| Male | 15 | 15 | 11 | 29 |
| Female | 15 | 15 | 10 | 28 |
| Age (years) | 51.7 ± 9.6 | 58.9 ± 9.5 | 59.6 ± 10.3 | 58.8 ± 8.6 |
| BMI (kg/m2) | 25.5 ± 2.5 | 24.8 ± 1.8 | 25.8 ± 2.3 | 23.3 ± 1.6 |
| CEA (ng/ml) | – | – | 4.56 ± 1.5 | 35.7 ± 3.5 |
| CA199 (u/ml) | – | – | 25.7 ± 3.5 | 78.6 ± 9.5 |
CNAG, chronic nonatrophic gastritis, CAG, chronic atrophic gastritis, EGC, early gastric cancer, AGC, advanced gastric cancer
Primer sequences for the assessed circRNAs
| Gene | Primers |
|---|---|
| β-actin (H) | F: 5′-GTGGCCGAGGACTTTGATTG-3′ R: 5′-CCTGTAACAACGCATCTCATATT-3′ |
| Hsa_circ_000102 | F: 5′-AACGTATGAGGGTAGAAGAGAGA-3′ R: 5′-TCAGGTCTATAATCAATTTCATCTC-3′ |
| Hsa_circ_000320 | F: 5′-AATCTTAAGGGGCCAAAATTG-3′ R: 5′-TCCATTTTGGGTCCTTTGATT-3′ |
| Hsa_circ_000324 | F: 5′-GTAAGTAAGTGCCCGCACCATA-3′ R: 5′-CAGCGTGTTAGCAACAGAACC-3′ |
| Hsa_circ_000780 | F: 5′-TAGGAAACCTGCTGTGGAGTG-3′ R: 5′-AAGGGAACTATACAAGGAAATGC-3′ |
| Hsa_circ_007738 | F: 5′-ACATTGAGGAAGAAGGGCAGTA-3′ R: 5′-TTCAAGAGGGCTTACCTGGTA-3′ |
| Hsa_circ_047478 | F: 5′-CAGGAAGCCTAAAGGATTTTG-3′ R: 5′-CTTCAATAAACGGGAGGTGGT-3′ |
| Hsa_circ_049637 | F: 5′-ATTAAATTTTGTGTCTCCGCG-3′ R: 5′-CCTTTAAAACGACCCTCCG-3′ |
| Hsa_circ_102411 | F: 5′-CACCAACGACCATGAGAAGGTG-3′ R: 5′-AAGGACAGCAGGACGCAGAC-3′ |
| Hsa_circ_103128 | F: 5′-CAAGCACCAAAAGCAAGAAA-3′ R: 5′-CAGCGGCAAAACTATAACACC-3′ |
| Hsa_circ_104293 | F: 5′-GCACAGATCTGATTCTGAACGT-3′ R: 5′-TCATTGGATATGTCCTGATAGTCC-3′ |
| Hsa_circ_404798 | F: 5′-CTTCCGAATGCAAGAAAGATTG-3′ R: 5′-CCCTTACGGTACTTGAGGACC-3′ |
| Hsa_circ_000250 | F: 5′-GGGAGTGGCTGTGGATAAGT-3′ R: 5′-AGCATTTTTGTGAAATGGTGC-3′ |
| Hsa_circ_018497 | F: 5′-GTGATGGATATGATGGTGCAT-3′ R: 5′-AGTCCACGAAGTCGTACTGTC-3′ |
| Hsa_circ_008882 | F: 5′-TGGCAGCCTAGCATTAGC-3′ R: 5′-AGGGAGGTTGAAGTGAGAGGT-3′ |
| Hsa_circ_002699 | F: 5′-TGAGCACTGCTTTAATAGGGG-3′ R: 5′-GCCTTCATTATGAGAGGTTTATC-3' |
Fig. 1The circRNA expression profiles in GC and paired adjacent noncancerous tissues. a Scatter plots were used to compare circRNA expression levels between GC and paired adjacent noncancerous tissues. b Volcano plots were used to visualize the differential expression of circRNAs between GC and paired adjacent noncancerous tissues. The red and green points in the plot represent the differentially expressed circRNAs with statistical significance. c Hierarchical cluster analysis of circRNAs expressed in GC (red bar) and paired adjacent noncancerous (blue bars) samples
The eight most upregulated and eight most downregulated circRNAs in GC
| CircRNA ID | Chromosome | Regulation | Fold change | Strand | Gene Symbol | ||
|---|---|---|---|---|---|---|---|
| Has_circ_000780 | chr10 | Down | 2.3500864 | – | FAM107B | 0.0212 | 0.0012 |
| Has_circ_047478 | chr18 | Up | 2.5070284 | + | KIAA1328 | 0.0174 | 0.0204 |
| Has_circ_404798 | chr10 | Down | 2.6790388 | – | DNMBP | 0.0185 | 0.0251 |
| Has_circ_104293 | chr7 | Up | 2.0857679 | – | FBXL18 | 0.0219 | 0.0376 |
| Has_circ_008882 | chrM | Down | 6.0137146 | + | MTND5 | 0.0120 | 0.18830 |
| Has_circ_000102 | chr1 | Up | 2.4795408 | – | AKNAD1 | 0.0398 | 0.2428 |
| Has_circ_049637 | chr19 | Down | 4.6708359 | + | CALR | 0.0173 | 0.2519 |
| Has_circ_103128 | chr21 | Down | 2.5589795 | + | DYRK1A | 0.0492 | 0.412 |
| Has_circ_405324 | chr15 | Down | 3.2099669 | + | STARD9 | 0.0261 | 0.4207 |
| Has_circ_102411 | chr19 | Down | 2.7435361 | – | MFSD12 | 0.0247 | 0.4911 |
| Has_circ_000250 | chr18 | Up | 2.2513738 | – | SMAD7 | 0.0368 | 0.6828 |
| Has_circ_000320 | chr11 | Down | 2.4551818 | – | AHNAK | 0.0359 | 0.7703 |
| Has_circ_000324 | chr11 | Up | 2.0957677 | + | NEAT1 | 0.0452 | 0.8573 |
| Has_circ_018497 | chr10 | Up | 2.0093889 | + | HNRNPH3 | 0.0467 | 0.8615 |
| Has_circ_007738 | chr9 | Up | 2.9836255 | – | SHC3 | 0.0374 | 0.8718 |
| Has_circ_002699 | chr7 | Up | 2.7422086 | + | MET | 0.0266 | 0.8893 |
Fig. 2Relative level distribution of hsa_circ_000780 in GC and adjacent tissue specimens
Fig. 3Bioinformatics analysis predicting hsa_circ_000780 interaction with A hsa_miR_522-3p, B hsa_miR_381-3p, C hsa_miR_300, and D hsa_miR_15a-3p
Associations of hsa_circ_000780 levels with clinicopathological characteristics in GC
| Characteristics | No. of patients ( | Expression levels of has_circ_000780 (Mean ± SD, × 10–4) | |
|---|---|---|---|
| Age (year) | |||
| ≥ 60 | 45 (57.7) | 5.97 ± 1.65 | 1.000 |
| < 60 | 33 (42.3) | 5.97 ± 2.12 | |
| Sex | |||
| Male | 40 (51.3) | 6.32 ± 3.09 | 0.112 |
| Female | 38 (48.7) | 7.45 ± 3.09 | |
| Tumor location | |||
| Sinuses ventriculi | 39 (50.0) | 6.20 ± 3.29 | 0.418 |
| Cardia | 17 (21.8) | 7.80 ± 3.04 | |
| Corpora ventriculi | 13 (16.7) | 6.90 ± 2.57 | |
| Others | 9 (11.5) | 7.98 ± 2.96 | |
| ≥ 5 | 38 (48.7) | 6.03 ± 3.16 | 0.020 |
| < 5 | 40 (51.3) | 7.67 ± 2.91 | |
| Differentiation | |||
| Well | 9 (11.5) | 7.29 ± 2.55 | 0.303 |
| Moderate | 36 (46.2) | 7.38 ± 3.04 | |
| Poor | 32 (41.3) | 6.20 ± 3.20 | |
| Early | 21 (26.9) | 5.08 ± 2.13 | 0.001 |
| Advanced | 57 (73.1) | 7.53 ± 3.19 | |
| Pathologic diagnosis | |||
| Signet ring cell cancer | 11 (14.1) | 5.21 ± 2.80 | 0.055 |
| Adenocarcinoma | 67 (85.9) | 7.14 ± 3.11 | |
| T1 and T2 | 25 (32.1) | 5.78 ± 2.84 | 0.029 |
| T3 and T4 | 53 (67.9) | 7.38 ± 3.14 | |
| Lymphatic metastasis | |||
| N0 | 28 (56.0) | 6.63 ± 3.44 | 0.625 |
| N1-2 | 50 (44.0) | 7.01 ± 2.96 | |
| Distal metastasis | |||
| M0 | 68 (87.2) | 5.81 ± 3.74 | 0.345 |
| M1 | 10 (12.8) | 7.03 ± 3.02 | |
| Absent | 41 (51.3) | 6.19 ± 3.20 | 0.042 |
| Present | 37 (51.3) | 7.62 ± 2.89 | |
| Positive | 25 (52.6) | 5.22 ± 2.63 | 0.001 |
| Negative | 53 (47.1) | 7.65 ± 3.05 | |
| Positive | 21 (26.9) | 4.67 ± 2.14 | 0.001 |
| Negative | 57 (73.1) | 7.68 ± 3.05 | |
Bold values: P < 0.05
Fig. 4Relative expression levels of hsa_circ_000780 in gastric juice samples. Hsa_circ_000780 levels in the gastric juice at various stages of GC, including CNAG (n = 30), CAG (n = 30), EGC (n = 21), and AGC (n = 57), were detected by qRT-PCR (***P < 0.001)