Literature DB >> 31343080

Past, present, and future of circRNAs.

Ines Lucia Patop1, Stas Wüst1, Sebastian Kadener1.   

Abstract

Exonic circular RNAs (circRNAs) are covalently closed RNA molecules generated by a process named back-splicing. circRNAs are highly abundant in eukaryotes, and many of them are evolutionary conserved. In metazoans, circular RNAs are expressed in a tissue-specific manner, are highly stable, and accumulate with age in neural tissues. circRNA biogenesis can regulate the production of the linear RNA counterpart in cis as back-splicing competes with linear splicing. Recent reports also demonstrate functions for some circRNAs in trans: Certain circRNAs interact with microRNAs, some are translated, and circRNAs have been shown to regulate immune responses and behavior. Here, we review current knowledge about animal circRNAs and summarize new insights into potential circRNA functions, concepts of their origin, and possible future directions in the field.
© 2019 The Authors.

Keywords:  RNA processing; circRNAs; circular RNAs; non-coding RNAs; splicing

Mesh:

Substances:

Year:  2019        PMID: 31343080      PMCID: PMC6694216          DOI: 10.15252/embj.2018100836

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  109 in total

1.  Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs.

Authors:  Yvonne Tay; Lev Kats; Leonardo Salmena; Dror Weiss; Shen Mynn Tan; Ugo Ala; Florian Karreth; Laura Poliseno; Paolo Provero; Ferdinando Di Cunto; Judy Lieberman; Isidore Rigoutsos; Pier Paolo Pandolfi
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

2.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

3.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

4.  circRNA biogenesis competes with pre-mRNA splicing.

Authors:  Reut Ashwal-Fluss; Markus Meyer; Nagarjuna Reddy Pamudurti; Andranik Ivanov; Osnat Bartok; Mor Hanan; Naveh Evantal; Sebastian Memczak; Nikolaus Rajewsky; Sebastian Kadener
Journal:  Mol Cell       Date:  2014-09-18       Impact factor: 17.970

5.  Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing.

Authors:  S Kadener; P Cramer; G Nogués; D Cazalla; M de la Mata; J P Fededa; S E Werbajh; A Srebrow; A R Kornblihtt
Journal:  EMBO J       Date:  2001-10-15       Impact factor: 11.598

Review 6.  A comprehensive overview and evaluation of circular RNA detection tools.

Authors:  Xiangxiang Zeng; Wei Lin; Maozu Guo; Quan Zou
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

Review 7.  NF90 isoforms, a new family of cellular proteins involved in viral replication?

Authors:  Claudia Patiño; Anne-Lise Haenni; Silvio Urcuqui-Inchima
Journal:  Biochimie       Date:  2014-11-04       Impact factor: 4.079

8.  cir-ITCH plays an inhibitory role in colorectal cancer by regulating the Wnt/β-catenin pathway.

Authors:  Guanli Huang; Hua Zhu; Yixiong Shi; Wenzhi Wu; Huajie Cai; Xiangjian Chen
Journal:  PLoS One       Date:  2015-06-25       Impact factor: 3.240

9.  Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.

Authors:  Marianne C Kramer; Dongming Liang; Deirdre C Tatomer; Beth Gold; Zachary M March; Sara Cherry; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2015-10-08       Impact factor: 11.361

10.  A length-dependent evolutionarily conserved pathway controls nuclear export of circular RNAs.

Authors:  Chuan Huang; Dongming Liang; Deirdre C Tatomer; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2018-05-17       Impact factor: 11.361

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  247 in total

1.  The RNA landscape of the human placenta in health and disease.

Authors:  Gordon C S Smith; D Stephen Charnock-Jones; Sungsam Gong; Francesca Gaccioli; Justyna Dopierala; Ulla Sovio; Emma Cook; Pieter-Jan Volders; Lennart Martens; Paul D W Kirk; Sylvia Richardson
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

Review 2.  Past, present, and future of circRNAs.

Authors:  Ines Lucia Patop; Stas Wüst; Sebastian Kadener
Journal:  EMBO J       Date:  2019-07-25       Impact factor: 11.598

3.  MiR-122-5p Mitigates Inflammation, Reactive Oxygen Species and SH-SY5Y Apoptosis by Targeting CPEB1 After Spinal Cord Injury Via the PI3K/AKT Signaling Pathway.

Authors:  Zijian Wei; Jun Liu; Hao Xie; Binbin Wang; Ji Wu; Zezhang Zhu
Journal:  Neurochem Res       Date:  2021-02-02       Impact factor: 3.996

4.  circDLPAG4/HECTD1 mediates ischaemia/reperfusion injury in endothelial cells via ER stress.

Authors:  Lulu Chen; Wei Luo; Wei Zhang; Han Chu; Jing Wang; Xiaoniu Dai; Yusi Cheng; Tiebing Zhu; Jie Chao
Journal:  RNA Biol       Date:  2019-10-13       Impact factor: 4.652

Review 5.  Expression and function of circular RNAs in the mammalian brain.

Authors:  Kaiyu Xu; Ying Zhang; Jiali Li
Journal:  Cell Mol Life Sci       Date:  2021-02-08       Impact factor: 9.261

6.  CircATP5SL promotes infantile haemangiomas progression via IGF1R regulation by targeting miR-873-5p.

Authors:  Zhiqiang Wei; Xiaoqi Yuan; Qi Ding; Yanan Xu; Lu Hong; Jianhua Wang
Journal:  Am J Transl Res       Date:  2021-03-15       Impact factor: 4.060

7.  The Regulation Network and Clinical Significance of Circular RNAs in Breast Cancer.

Authors:  Juan Xu; Xiyi Chen; Yu Sun; Yaqian Shi; Fang Teng; Mingming Lv; Chen Liu; Xuemei Jia
Journal:  Front Oncol       Date:  2021-07-09       Impact factor: 6.244

Review 8.  Mobius strip in pancreatic cancer: biogenesis, function and clinical significance of circular RNAs.

Authors:  Bangbo Zhao; Zeru Li; Cheng Qin; Tianhao Li; Yuanyang Wang; Hongtao Cao; Xiaoying Yang; Weibin Wang
Journal:  Cell Mol Life Sci       Date:  2021-08-03       Impact factor: 9.261

Review 9.  Liquid biopsy as a perioperative biomarker of digestive tract cancers: review of the literature.

Authors:  Katsutoshi Shoda; Ryo Saito; Suguru Maruyama; Shinji Furuya; Hidenori Akaike; Yoshihiko Kawaguchi; Hidetake Amemiya; Hiromichi Kawaida; Makoto Sudo; Shingo Inoue; Hiroshi Kono; Daisuke Ichikawa
Journal:  Surg Today       Date:  2020-09-26       Impact factor: 2.549

Review 10.  Biogenesis and Functions of Circular RNAs Come into Focus.

Authors:  Mei-Sheng Xiao; Yuxi Ai; Jeremy E Wilusz
Journal:  Trends Cell Biol       Date:  2020-01-20       Impact factor: 20.808

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