Literature DB >> 34726180

Nanocrystalline protein domains via salting-out.

Daniel G Greene1, Shannon Modla2, Stanley I Sandler1, Norman J Wagner1, Abraham M Lenhoff1.   

Abstract

Protein salting-out is a well established phenomenon that in many cases leads to amorphous structures and protein gels, which are usually not considered to be useful for protein structure determination. Here, microstructural measurements of several different salted-out protein dense phases are reported, including of lysozyme, ribonuclease A and an IgG1, showing that salted-out protein gels unexpectedly contain highly ordered protein nanostructures that assemble hierarchically to create the gel. The nanocrystalline domains are approximately 10-100 nm in size, are shown to have structures commensurate with those of bulk crystals and grow on time scales in the order of an hour to a day. Beyond revealing the rich, hierarchical nanoscale to mesoscale structure of protein gels, the nanocrystals that these phases contain are candidates for structural biology on next-generation X-ray free-electron lasers, which may enable the study of biological macromolecules that are difficult or impossible to crystallize in bulk.

Entities:  

Keywords:  X-ray free-electron lasers; protein crystallization; salting-out; small-angle scattering

Mesh:

Substances:

Year:  2021        PMID: 34726180      PMCID: PMC8561819          DOI: 10.1107/S2053230X21009961

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  25 in total

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Authors:  J Miao; K O Hodgson; D Sayre
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

Review 2.  Introduction to protein crystallization.

Authors:  Alexander McPherson
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

3.  High-throughput biological small-angle X-ray scattering with a robotically loaded capillary cell.

Authors:  S S Nielsen; M Møller; R E Gillilan
Journal:  J Appl Crystallogr       Date:  2012-02-09       Impact factor: 3.304

4.  Protein phase behavior in aqueous solutions: crystallization, liquid-liquid phase separation, gels, and aggregates.

Authors:  André C Dumetz; Aaron M Chockla; Eric W Kaler; Abraham M Lenhoff
Journal:  Biophys J       Date:  2008-01-15       Impact factor: 4.033

5.  Crystal-arrested phase separation.

Authors:  Juan Sabin; Arthur E Bailey; Gabriel Espinosa; Barbara J Frisken
Journal:  Phys Rev Lett       Date:  2012-11-07       Impact factor: 9.161

6.  Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature.

Authors:  Jan Kern; Roberto Alonso-Mori; Rosalie Tran; Johan Hattne; Richard J Gildea; Nathaniel Echols; Carina Glöckner; Julia Hellmich; Hartawan Laksmono; Raymond G Sierra; Benedikt Lassalle-Kaiser; Sergey Koroidov; Alyssa Lampe; Guangye Han; Sheraz Gul; Dörte Difiore; Despina Milathianaki; Alan R Fry; Alan Miahnahri; Donald W Schafer; Marc Messerschmidt; M Marvin Seibert; Jason E Koglin; Dimosthenis Sokaras; Tsu-Chien Weng; Jonas Sellberg; Matthew J Latimer; Ralf W Grosse-Kunstleve; Petrus H Zwart; William E White; Pieter Glatzel; Paul D Adams; Michael J Bogan; Garth J Williams; Sébastien Boutet; Johannes Messinger; Athina Zouni; Nicholas K Sauter; Vittal K Yachandra; Uwe Bergmann; Junko Yano
Journal:  Science       Date:  2013-02-14       Impact factor: 47.728

Review 7.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

8.  A comparative study of monoclonal antibodies. 1. Phase behavior and protein-protein interactions.

Authors:  Rachael A Lewus; Nicholas E Levy; Abraham M Lenhoff; Stanley I Sandler
Journal:  Biotechnol Prog       Date:  2014-11-19

9.  Room-temperature serial crystallography using a kinetically optimized microfluidic device for protein crystallization and on-chip X-ray diffraction.

Authors:  Michael Heymann; Achini Opthalage; Jennifer L Wierman; Sathish Akella; Doletha M E Szebenyi; Sol M Gruner; Seth Fraden
Journal:  IUCrJ       Date:  2014-08-25       Impact factor: 4.769

10.  Macromolecular diffractive imaging using imperfect crystals.

Authors:  Kartik Ayyer; Oleksandr M Yefanov; Dominik Oberthür; Shatabdi Roy-Chowdhury; Lorenzo Galli; Valerio Mariani; Shibom Basu; Jesse Coe; Chelsie E Conrad; Raimund Fromme; Alexander Schaffer; Katerina Dörner; Daniel James; Christopher Kupitz; Markus Metz; Garrett Nelson; Paulraj Lourdu Xavier; Kenneth R Beyerlein; Marius Schmidt; Iosifina Sarrou; John C H Spence; Uwe Weierstall; Thomas A White; Jay-How Yang; Yun Zhao; Mengning Liang; Andrew Aquila; Mark S Hunter; Joseph S Robinson; Jason E Koglin; Sébastien Boutet; Petra Fromme; Anton Barty; Henry N Chapman
Journal:  Nature       Date:  2016-02-11       Impact factor: 49.962

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