Literature DB >> 18160663

Protein phase behavior in aqueous solutions: crystallization, liquid-liquid phase separation, gels, and aggregates.

André C Dumetz1, Aaron M Chockla, Eric W Kaler, Abraham M Lenhoff.   

Abstract

The aggregates and gels commonly observed during protein crystallization have generally been considered disordered phases without further characterization. Here their physical nature is addressed by investigating protein salting-out in ammonium sulfate and sodium chloride for six proteins (ovalbumin, ribonuclease A, soybean trypsin inhibitor, lysozyme, and beta-lactoglobulin A and B) at 4 degrees C, 23 degrees C, and 37 degrees C. When interpreted within the framework of a theoretical phase diagram obtained for colloidal particles displaying short-range attractive interactions, the results show that the formation of aggregates can be interpreted theoretically in terms of a gas-liquid phase separation for aggregates that are amorphous or gel-like. A notable additional feature is the existence of a second aggregation line observed for both ovalbumin and ribonuclease A in ammonium sulfate, interpreted theoretically as the spinodal. Further investigation of ovalbumin and lysozyme reveals that the formation of aggregates can be interpreted, in light of theoretical results from mode-coupling theory, as a kinetically trapped state or a gel phase that occurs through the intermediate of a gas-liquid phase separation. Despite the limitations of simple theoretical models of short-range attractive interactions, such as their inability to reproduce the effect of temperature, they provide a framework useful to describe the main features of protein phase behavior.

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Year:  2008        PMID: 18160663      PMCID: PMC2157236          DOI: 10.1529/biophysj.107.116152

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  52 in total

1.  Higher-order glass-transition singularities in colloidal systems with attractive interactions.

Authors:  K Dawson; G Foffi; M Fuchs; W Götze; F Sciortino; M Sperl; P Tartaglia; T Voigtmann; E Zaccarelli
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2000-12-19

2.  Phase behavior of small attractive colloidal particles.

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Journal:  Phys Rev Lett       Date:  1996-01-01       Impact factor: 9.161

3.  Multiple glassy states in a simple model system.

Authors:  K N Pham; A M Puertas; J Bergenholtz; S U Egelhaaf; A Moussaïd; P N Pusey; A B Schofield; M E Cates; M Fuchs; W C K Poon
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

Review 4.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

5.  Morphology and kinetics of phase separating transparent xanthan-colloid mixtures.

Authors:  Gijsberta H Koenderink; Dirk G A L Aarts; Volkert W A de Villeneuve; Albert P Philipse; Remco Tuinier; Henk N W Lekkerkerker
Journal:  Biomacromolecules       Date:  2003 Jan-Feb       Impact factor: 6.988

6.  Correlation between the osmotic second virial coefficient and solubility for equine serum albumin and ovalbumin.

Authors:  Kristen Demoruelle; Bin Guo; Shangming Kao; Heather M McDonald; Dragan B Nikic; Steven C Holman; W William Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

7.  Binary-liquid phase separation of lens protein solutions.

Authors:  M L Broide; C R Berland; J Pande; O O Ogun; G B Benedek
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

8.  Equilibrium cluster formation in concentrated protein solutions and colloids.

Authors:  Anna Stradner; Helen Sedgwick; Frédéric Cardinaux; Wilson C K Poon; Stefan U Egelhaaf; Peter Schurtenberger
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

9.  Patterns of protein protein interactions in salt solutions and implications for protein crystallization.

Authors:  André C Dumetz; Ann M Snellinger-O'brien; Eric W Kaler; Abraham M Lenhoff
Journal:  Protein Sci       Date:  2007-09       Impact factor: 6.725

10.  Using phase transitions to investigate the effect of salts on protein interactions.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-06
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  44 in total

1.  The effect of ionic strength, temperature, and pressure on the interaction potential of dense protein solutions: from nonlinear pressure response to protein crystallization.

Authors:  Johannes Möller; Martin A Schroer; Mirko Erlkamp; Sebastian Grobelny; Michael Paulus; Sebastian Tiemeyer; Florian J Wirkert; Metin Tolan; Roland Winter
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

2.  Phase separation of an IgG1 antibody solution under a low ionic strength condition.

Authors:  Hirotaka Nishi; Makoto Miyajima; Hiroaki Nakagami; Masanori Noda; Susumu Uchiyama; Kiichi Fukui
Journal:  Pharm Res       Date:  2010-04-17       Impact factor: 4.200

3.  Local Crystalline Structure in an Amorphous Protein Dense Phase.

Authors:  Daniel G Greene; Shannon Modla; Norman J Wagner; Stanley I Sandler; Abraham M Lenhoff
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

4.  Application of a PEG precipitation method for solubility screening: a tool for developing high protein concentration formulations.

Authors:  Li Li; Angela Kantor; Nicholas Warne
Journal:  Protein Sci       Date:  2013-06-24       Impact factor: 6.725

5.  Phase transitions in human IgG solutions.

Authors:  Ying Wang; Aleksey Lomakin; Ramil F Latypov; Jacob P Laubach; Teru Hideshima; Paul G Richardson; Nikhil C Munshi; Kenneth C Anderson; George B Benedek
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

6.  Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.

Authors:  Yongdae Shin; Joel Berry; Nicole Pannucci; Mikko P Haataja; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

7.  Protein collapse driven against solvation free energy without H-bonds.

Authors:  Deepti Karandur; Robert C Harris; B Montgomery Pettitt
Journal:  Protein Sci       Date:  2015-08-08       Impact factor: 6.725

8.  A stepwise mechanism for aqueous two-phase system formation in concentrated antibody solutions.

Authors:  Bradley A Rogers; Kelvin B Rembert; Matthew F Poyton; Halil I Okur; Amanda R Kale; Tinglu Yang; Jifeng Zhang; Paul S Cremer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-23       Impact factor: 11.205

Review 9.  Cellular sensing by phase separation: Using the process, not just the products.

Authors:  Haneul Yoo; Catherine Triandafillou; D Allan Drummond
Journal:  J Biol Chem       Date:  2019-03-15       Impact factor: 5.157

10.  Resolving self-association of a therapeutic antibody by formulation optimization and molecular approaches.

Authors:  Paul Casaz; Elisabeth Boucher; Rachel Wollacott; Brian G Pierce; Rachel Rivera; Maja Sedic; Sadettin Ozturk; William D Thomas; Yang Wang
Journal:  MAbs       Date:  2014       Impact factor: 5.857

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