Literature DB >> 34611297

RNA-interference screen for p53 regulators unveils a role of WDR75 in ribosome biogenesis.

Pavel Moudry1, Katarina Chroma2, Sladana Bursac3, Sinisa Volarevic3, Jiri Bartek4,5,6.   

Abstract

Ribosome biogenesis is an essential, energy demanding process whose deregulation has been implicated in cancer, aging, and neurodegeneration. Ribosome biogenesis is therefore under surveillance of pathways including the p53 tumor suppressor. Here, we first performed a high-content siRNA-based screen of 175 human ribosome biogenesis factors, searching for impact on p53. Knock-down of 4 and 35 of these proteins in U2OS cells reduced and increased p53 abundance, respectively, including p53 accumulation after depletion of BYSL, DDX56, and WDR75, the effects of which were validated in several models. Using complementary approaches including subcellular fractionation, we demonstrate that endogenous human WDR75 is a nucleolar protein and immunofluorescence analysis of ectopic GFP-tagged WDR75 shows relocation to nucleolar caps under chemically induced nucleolar stress, along with several canonical nucleolar proteins. Mechanistically, we show that WDR75 is required for pre-rRNA transcription, through supporting the maintenance of physiological levels of RPA194, a key subunit of the RNA polymerase I. Furthermore, WDR75 depletion activated the RPL5/RPL11-dependent p53 stabilization checkpoint, ultimately leading to impaired proliferation and cellular senescence. These findings reveal a crucial positive role of WDR75 in ribosome biogenesis and provide a resource of human ribosomal factors the malfunction of which affects p53.
© 2021. The Author(s), under exclusive licence to ADMC Associazione Differenziamento e Morte Cellulare.

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Year:  2021        PMID: 34611297      PMCID: PMC8901908          DOI: 10.1038/s41418-021-00882-0

Source DB:  PubMed          Journal:  Cell Death Differ        ISSN: 1350-9047            Impact factor:   12.067


  61 in total

1.  Evolution of protein synthesis from an RNA world.

Authors:  Harry F Noller
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-04-01       Impact factor: 10.005

2.  Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.

Authors:  Jingyu Zhang; Piyanun Harnpicharnchai; Jelena Jakovljevic; Lan Tang; Yurong Guo; Marlene Oeffinger; Michael P Rout; Shawna L Hiley; Timothy Hughes; John L Woolford
Journal:  Genes Dev       Date:  2007-10-15       Impact factor: 11.361

Review 3.  A liaison between mTOR signaling, ribosome biogenesis and cancer.

Authors:  Antonio Gentilella; Sara C Kozma; George Thomas
Journal:  Biochim Biophys Acta       Date:  2015-02-28

Review 4.  Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes.

Authors:  Sarah J Goodfellow; Joost C B M Zomerdijk
Journal:  Subcell Biochem       Date:  2013

Review 5.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

Review 6.  Ribosome biogenesis in cancer: new players and therapeutic avenues.

Authors:  Joffrey Pelletier; George Thomas; Siniša Volarević
Journal:  Nat Rev Cancer       Date:  2017-12-01       Impact factor: 60.716

7.  Genome-wide RNAi Screening Identifies Protein Modules Required for 40S Subunit Synthesis in Human Cells.

Authors:  Lukas Badertscher; Thomas Wild; Christian Montellese; Leila T Alexander; Lukas Bammert; Marie Sarazova; Michael Stebler; Gabor Csucs; Thomas U Mayer; Nicola Zamboni; Ivo Zemp; Peter Horvath; Ulrike Kutay
Journal:  Cell Rep       Date:  2015-12-17       Impact factor: 9.423

Review 8.  Uncovering the assembly pathway of human ribosomes and its emerging links to disease.

Authors:  Katherine E Bohnsack; Markus T Bohnsack
Journal:  EMBO J       Date:  2019-05-14       Impact factor: 11.598

Review 9.  A new system for naming ribosomal proteins.

Authors:  Nenad Ban; Roland Beckmann; Jamie H D Cate; Jonathan D Dinman; François Dragon; Steven R Ellis; Denis L J Lafontaine; Lasse Lindahl; Anders Liljas; Jeffrey M Lipton; Michael A McAlear; Peter B Moore; Harry F Noller; Joaquin Ortega; Vikram Govind Panse; V Ramakrishnan; Christian M T Spahn; Thomas A Steitz; Marek Tchorzewski; David Tollervey; Alan J Warren; James R Williamson; Daniel Wilson; Ada Yonath; Marat Yusupov
Journal:  Curr Opin Struct Biol       Date:  2014-02-10       Impact factor: 6.809

10.  Involvement of human ribosomal proteins in nucleolar structure and p53-dependent nucleolar stress.

Authors:  Emilien Nicolas; Pascaline Parisot; Celina Pinto-Monteiro; Roxane de Walque; Christophe De Vleeschouwer; Denis L J Lafontaine
Journal:  Nat Commun       Date:  2016-06-06       Impact factor: 14.919

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  4 in total

Review 1.  Targeting Ribosome Biogenesis in Cancer: Lessons Learned and Way Forward.

Authors:  Asimina Zisi; Jiri Bartek; Mikael S Lindström
Journal:  Cancers (Basel)       Date:  2022-04-24       Impact factor: 6.575

2.  Identification of Immune-Related Key Genes as Potential Diagnostic Biomarkers of Sepsis in Children.

Authors:  Huabin Wang; Junbin Huang; Wenfang Yi; Jiahong Li; Nannan He; Liangliang Kang; Zhijie He; Chun Chen
Journal:  J Inflamm Res       Date:  2022-04-14

Review 3.  p53 at the crossroad of DNA replication and ribosome biogenesis stress pathways.

Authors:  Mikael S Lindström; Jiri Bartek; Apolinar Maya-Mendoza
Journal:  Cell Death Differ       Date:  2022-04-20       Impact factor: 12.067

4.  Emetine blocks DNA replication via proteosynthesis inhibition not by targeting Okazaki fragments.

Authors:  David Lukac; Zuzana Machacova; Pavel Moudry
Journal:  Life Sci Alliance       Date:  2022-09-09
  4 in total

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