Literature DB >> 23150253

Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes.

Sarah J Goodfellow1, Joost C B M Zomerdijk.   

Abstract

RNA Polymerase (Pol) I produces ribosomal (r)RNA, an essential component of the cellular protein synthetic machinery that drives cell growth, underlying many fundamental cellular processes. Extensive research into the mechanisms governing transcription by Pol I has revealed an intricate set of control mechanisms impinging upon rRNA production. Pol I-specific transcription factors guide Pol I to the rDNA promoter and contribute to multiple rounds of transcription initiation, promoter escape, elongation and termination. In addition, many accessory factors are now known to assist at each stage of this transcription cycle, some of which allow the integration of transcriptional activity with metabolic demands. The organisation and accessibility of rDNA chromatin also impinge upon Pol I output, and complex mechanisms ensure the appropriate maintenance of the epigenetic state of the nucleolar genome and its effective transcription by Pol I. The following review presents our current understanding of the components of the Pol I transcription machinery, their functions and regulation by associated factors, and the mechanisms operating to ensure the proper transcription of rDNA chromatin. The importance of such stringent control is demonstrated by the fact that deregulated Pol I transcription is a feature of cancer and other disorders characterised by abnormal translational capacity.

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Year:  2013        PMID: 23150253      PMCID: PMC3855190          DOI: 10.1007/978-94-007-4525-4_10

Source DB:  PubMed          Journal:  Subcell Biochem        ISSN: 0306-0225


  187 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

2.  Establishment and maintenance of alternative chromatin states at a multicopy gene locus.

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Journal:  Cell       Date:  2011-05-13       Impact factor: 41.582

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5.  Functional cooperativity between transcription factors UBF1 and SL1 mediates human ribosomal RNA synthesis.

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Journal:  Science       Date:  1988-09-02       Impact factor: 47.728

6.  Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.

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Journal:  Nature       Date:  1990-04-26       Impact factor: 49.962

7.  Activation of RNA polymerase I transcription by cockayne syndrome group B protein and histone methyltransferase G9a.

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Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

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Journal:  EMBO J       Date:  1987-11       Impact factor: 11.598

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Authors:  Maciej Pietrzak; Grzegorz Rempala; Peter T Nelson; Jing-Juan Zheng; Michal Hetman
Journal:  PLoS One       Date:  2011-07-22       Impact factor: 3.240

10.  The HMG box-containing nucleolar transcription factor UBF interacts with a specific subunit of RNA polymerase I.

Authors:  G Schnapp; F Santori; C Carles; M Riva; I Grummt
Journal:  EMBO J       Date:  1994-01-01       Impact factor: 11.598

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  64 in total

Review 1.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

Review 2.  Regulation of Ribosome Biogenesis in Skeletal Muscle Hypertrophy.

Authors:  Vandré Casagrande Figueiredo; John J McCarthy
Journal:  Physiology (Bethesda)       Date:  2019-01-01

Review 3.  Cross-species RNA-seq for deciphering host-microbe interactions.

Authors:  Alexander J Westermann; Jörg Vogel
Journal:  Nat Rev Genet       Date:  2021-02-17       Impact factor: 53.242

4.  Putative group I introns in the eukaryote nuclear internal transcribed spacers.

Authors:  Daniele Corsaro; Danielle Venditti
Journal:  Curr Genet       Date:  2019-08-28       Impact factor: 3.886

5.  RNA polymerase III accurately initiates transcription from RNA polymerase II promoters in vitro.

Authors:  Sascha H C Duttke
Journal:  J Biol Chem       Date:  2014-06-10       Impact factor: 5.157

6.  Experimental Autoimmune Encephalomyelitis Ameliorated by Passive Transfer of Polymerase 1-Silenced MOG35-55 Lymphatic Node Cells: Verification of a Novel Therapeutic Approach in Multiple Sclerosis.

Authors:  R Zilkha-Falb; M Gurevich; A Achiron
Journal:  Neuromolecular Med       Date:  2017-07-28       Impact factor: 3.843

7.  TBP loading by AF4 through SL1 is the major rate-limiting step in MLL fusion-dependent transcription.

Authors:  Hiroshi Okuda; Satoshi Takahashi; Akifumi Takaori-Kondo; Akihiko Yokoyama
Journal:  Cell Cycle       Date:  2016-08-26       Impact factor: 4.534

8.  SUMOylation down-regulates rDNA transcription by repressing expression of upstream-binding factor and proto-oncogene c-Myc.

Authors:  Yu Peng; Zhenxing Wang; Zhiqiang Wang; Fang Yu; Jiwen Li; Jiemin Wong
Journal:  J Biol Chem       Date:  2019-11-06       Impact factor: 5.157

9.  Mammary epithelial morphogenesis and early breast cancer. Evidence of involvement of basal components of the RNA Polymerase I transcription machinery.

Authors:  Stefano Rossetti; Andrzej J Wierzbicki; Nicoletta Sacchi
Journal:  Cell Cycle       Date:  2016-08-02       Impact factor: 4.534

Review 10.  Nucleolus-like compartmentalization of the transcription machinery in fast-growing bacterial cells.

Authors:  Ding Jun Jin; Carmen Mata Martin; Zhe Sun; Cedric Cagliero; Yan Ning Zhou
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-12-23       Impact factor: 8.250

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