| Literature DB >> 34526600 |
Imran Mohammed1, Harminder S Dua2,3, Darren Shu Jeng Ting1,4,5, Eunice Tze Leng Goh5, Venkatesh Mayandi5, Joanna M F Busoy5, Thet Tun Aung5, Mercy Halleluyah Periayah5, Mario Nubile6, Leonardo Mastropasqua6, Dalia G Said1,4, Hla M Htoon5, Veluchamy Amutha Barathi5, Roger W Beuerman5,7, Rajamani Lakshminarayanan5.
Abstract
Bacterial keratitis (BK) is a major cause of corneal blindness globally. This study aimed to develop a novel class of antimicrobial therapy, based on human-derived hybrid host defense peptides (HyHDPs), for treating BK. HyHDPs were rationally designed through combination of functional amino acids in parent HDPs, including LL-37 and human beta-defensin (HBD)-1 to -3. Minimal inhibitory concentrations (MICs) and time-kill kinetics assay were performed to determine the concentration- and time-dependent antimicrobial activity and cytotoxicity was evaluated against human corneal epithelial cells and erythrocytes. In vivo safety and efficacy of the most promising peptide was examined in the corneal wound healing and Staphylococcus aureus (ATCC SA29213) keratitis murine models, respectively. A second-generation HyHDP (CaD23), based on rational hybridization of the middle residues of LL-37 and C-terminal of HBD-2, was developed and was shown to demonstrate good efficacy against methicillin-sensitive and methicillin-resistant S. aureus [MIC = 12.5-25.0 μg/ml (5.2-10.4 μM)] and S. epidermidis [MIC = 12.5 μg/ml (5.2 μM)], and moderate efficacy against P. aeruginosa [MIC = 25-50 μg/ml (10.4-20.8 μM)]. CaD23 (at 25 μg/ml or 2× MIC) killed all the bacteria within 30 min, which was 8 times faster than amikacin (25 μg/ml or 20× MIC). After 10 consecutive passages, S. aureus (ATCC SA29213) did not develop any antimicrobial resistance (AMR) against CaD23 whereas it developed significant AMR (i.e. a 32-fold increase in MIC) against amikacin, a commonly used treatment for BK. Pre-clinical murine studies showed that CaD23 (0.5 mg/ml) achieved a median reduction of S. aureus bioburden by 94% (or 1.2 log10 CFU/ml) while not impeding corneal epithelial wound healing. In conclusion, rational hybridization of human-derived HDPs has led to generation of a potentially efficacious and safe topical antimicrobial agent for treating Gram-positive BK, with no/minimal risk of developing AMR.Entities:
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Year: 2021 PMID: 34526600 PMCID: PMC8443647 DOI: 10.1038/s41598-021-97821-3
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Summary of the native and synthetic host defense peptide (HDP) sequences.
| Types | Peptides | Peptide sequence | Number of AA | Molecular weight, g/mol | Net charge | Hydrophobicity, <H> | Hydrophobic moment, <µH> |
|---|---|---|---|---|---|---|---|
| Native | HBD1 | DHYNCVSSGG QCLYSACPIF TKIQGTCYRG KAKCCK | 36 | 3934.6 | + 4 | 0.431 | 0.348 |
| HBD2 | GIGDPVTCLK SGAICHPVFC PRRYKQIGTC GLPGTKCCKK P | 41 | 4334.2 | + 6 | 0.489 | 0.246 | |
| HBD3 | GIINTLQKYY CRVRGGRCAV LSCLPKEEQI GKCSTRGRKC CRRKK | + | |||||
| LL37 | LLGDFFRKSK EKIGKEFKRI VQRIKDFLRN LVPRTES | + | |||||
| Synthetic single HDPs | Ca12 | KRIVQRIKDF LR | 12 | 1571.9 | + 4 | 0.193 | 0.782 |
| BD2a | KCCKKP | 6 | 705.9 | + 3 | – | – | |
| BD3 | RGRKCCRRKK | 10 | 1290.6 | + 7 | − 0.393 | 0.300 | |
| 1st generation HyHDPs | DD12 | RGKAKCCKGT KCCKKP | 16 | 1739.2 | + 7 | 0.031 | 0.144 |
| DD13 | RGKAKCCKRG RKCCRRKK | 18 | 2165.7 | + 11 | − 0.251 | 0.200 | |
| DD32 | RGRKCCRRKK KCCKKP | 16 | 1978.5 | + 10 | − 0.194 | 0.201 | |
| CaD1 | KRIVQRIKDF LRRGKAK | 17 | 2112.6 | + 7 | − 0.022 | 0.383 | |
| CaD2 | KRIVQRIKDF LRKCCKKP | 18 | 2259.8 | + 7 | 0.174 | 0.445 | |
| CaD3 | RIKDFLRNGR KCCRRKK | 17 | 2177.7 | + 8 | − 0.118 | 0.234 | |
| 2nd generation HyHDPs | CaD21 | KRIVQRIKDF LRKACKKP | 18 | 2227.8 | + 7 | 0.106 | 0.443 |
| CaD22 | KRIVQRIKDW LRKCCKKP | 18 | 2298.9 | + 7 | 0.200 | 0.456 | |
| CaD23 | KRIVQRIKDW LRKLCKKW | 18 | 2398.0 | + 7 | 0.294 | 0.456 |
Calculation of the physicochemical properties of the peptides was performed using PepCalc (https://pepcalc.com/) and HeliQuest (https://heliquest.ipmc.cnrs.fr/cgi-bin/ComputParams.py).
HBD: human beta-defensin; AA: amino acids; HyHDPs: hybrid host defense peptides; C: cysteine; D: aspartic acid; E: glutamic acid; F: phenylalanine; G: glycine; I: isoleucine; K: lysine; L: leucine; N: aspargine; P: proline; Q: glutamine; R: arginine; S: serine; T: theorine; V: valine; W: tryptophan.
aThe sequence is too short for calculation of hydrophobicity and hydrophobic moment.
A summary of the minimum inhibitory concentrations (MICs) of various antibiotics and synthetic human-derived hybrid host defense peptides.
| Class of agent | Agents μg/ml (μM) | MRSA-OS | MRSA ATCC 43300 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 mM | 150 mM | 0 mM | 150 mM | 0 mM | 150 mM | 0 mM | 150 mM | 0 mM | 150 mM | 0 mM | 150 mM | 0 mM | 150 mM | ||
| Antibiotics | Amikacin | 1.25 (2.13) | 2.5 (4.27) | – | – | 10 (17.1) | 10 (17.1) | – | – | – | – | 0.63 (1.08) | 1.25 (2.13) | 0.63 (1.08) | 1.25 (2.13) |
| Levofloxacin | 0.31 (0.86) | 0.31 (0.86) | – | – | 0.31 (0.86) | 0.31 (0.86) | – | – | – | – | 0.31 (0.86) | 0.31 (0.86) | 0.31 (0.86) | 0.31 (0.86) | |
| Full-length peptide | LL37 | 25 (5.6) | – | – | – | 25 (5.6) | – | – | – | – | – | 50 (11.1) | – | – | – |
| HBD2 | 100 (23.1) | – | – | – | 100 (23.1) | – | – | – | – | – | 100 (23.1) | – | – | – | |
| HBD3 | 100 (19.4) | – | – | – | 100 (19.4) | – | – | – | – | – | 100 (19.4) | – | – | – | |
| Single linear HDPs | Ca12 | > 200 (> 127.2) | – | – | – | > 200 (> 127.2) | – | – | – | – | – | 200 (127.2) | – | – | – |
| BD2-6 | > 200 (> 283.3) | – | – | – | > 200 (> 283.3) | – | – | – | – | – | > 200 (> 283.3) | – | – | – | |
| BD3-10 | > 200 (> 154.9) | > 200 (> 154.9) | > 200 (> 154.9) | – | – | ||||||||||
| First–generation hybrid HDPs | DD12 | > 200 (> 115) | – | – | – | > 200 (> 115) | – | – | – | – | – | > 200 (> 115) | – | – | – |
| DD13 | > 200 (> 92.3) | – | – | – | > 200 (> 92.3) | – | – | – | – | – | > 200 (> 92.3) | – | – | – | |
| DD32 | > 200 (> 101) | – | – | – | > 200 (> 101) | – | – | – | – | – | > 200 (> 101) | – | – | – | |
| CaD1 | > 200 (> 94.7) | – | – | – | > 200 (> 94.7) | – | – | – | – | – | > 200 (> 94.7) | – | – | – | |
| CaD2 | > 200 (> 88.5) | – | – | – | > 200 (> 88.5) | – | – | – | – | – | > 200 (> 88.5) | – | – | – | |
| CaD3 | > 200 (> 91.8) | – | – | – | > 200 (> 91.8) | – | – | – | – | – | > 200 (> 91.8) | – | – | – | |
| Second–generation hybrid HDPs | CaD21 | 200 (89.8) | – | – | – | > 200 (> 89.8) | – | – | – | – | – | 100 (44.9) | 100 (44.9) | 200 (89.8) | – |
| CaD22 | 100 (43.5) | > 200 (> 87.0) | – | – | > 200 (> 87.0) | – | – | – | – | – | 200 (87.0) | – | 200 (87.0) | – | |
| CaD23 | 12.5 (5.2) | 25 (10.4) | 25 (10.4) | 50 (20.8) | 25 (10.4) | 100 (41.7) | 25 (10.4) | 100 (41.7) | 12.5 (5.2) | 12.5 (5.2) | 50 (20.8) | 50 (20.8) | 25 (10.4) | 50 (20.8) | |
All experiments were performed in full-strength cationic Muller-Hinton broth (i.e. MHB-2) and in the absence or presence of physiological tear salt concentration (150 mM NaCl). The MIC values are presented in μg/ml (and μM in bracket). When the MIC level was ≥ 200 μg/ml in the absence of salt, the peptide was not subjected to testing in the presence of salt.
MIC refers to the lowest concentration of antibiotic/peptide that prevents any visible bacterial growth after 24 h of incubation with treatment. Data represent the mean of two biological duplicate from two to three independent experiments.
ATCC: American Type Culture Collection; MRSA-OS: methicillin-resistant S. aureus; OS: ocular surface.
Figure 1Cytotoxicity of synthetic peptides and amikacin (a commonly used antibiotic for bacterial keratitis) in various concentrations against human corneal epithelial cells (HCE-2), presented as dose–response curves (normalized, variable slope). Percentage cell viability is presented as mean ± standard deviation (depicted in error bars) of two independent experiments performed in biological duplicate. Some error bars are missing due to small standard deviation values. (A) Cell viability assay (using cell counting kit-8 assay) demonstrating normal metabolic activity of epithelial cells in CaD2 and amikacin but reduced activity in CaD23 (IC50 = 54.6 ± 11.7 μg/ml) after 3 h of treatment. IC50 (concentration of treatment inhibiting 50% of cell viability) is shown in a black dotted line. (B) Cytotoxicity assay (using lactate dehydrogenase assay) demonstrating no sign of cytotoxicity of epithelial cells in amikacin and CaD2, and low level of cytotoxicity in CaD23 (30.4 ± 7.8% at 200 μg/ml; LC50 > 200 μg/ml) after 3 h of treatment.
Figure 2Hemolytic effect of CaD23 and levofloxacin (a commonly used antibiotic for bacterial keratitis) in various concentrations against fresh human erythrocytes, determined after 1 h of treatment. Percentage hemolysis is presented as mean ± standard deviation (depicted in error bars) of two independent experiments performed in biological duplicate. Some error bars are missing due to small standard deviation values. The graph demonstrating minimal hemolytic effect of CaD23 against fresh human erythrocytes (only 7.1 ± 3.0% at 200 μg/ml).
Summary of the cytotoxicity, cell viability and hemolytic results of antibiotics and synthetic peptides (in µg/ml concentration).
| Types | Agents | LC50 | Lmax (%) | IC50 | Imax (%) | HC50 | Hmax (%) |
|---|---|---|---|---|---|---|---|
| Antibiotics | Amikacin | > 200 | 0.0 (0.1) | > 200 | 100.1 (7.3) | > 200 | 0.0 |
| Levofloxacin | > 200 | 1.2 (0.7) | > 200 | 108.0 (2.8) | > 200 | 0 (0.0) | |
| First-generation peptides | DD12 | – | – | – | – | – | – |
| DD13 | – | – | – | – | – | – | |
| DD32 | – | – | – | – | – | – | |
| CaD1 | – | – | – | – | – | – | |
| CaD2 | > 200 | 2.9 (2.2) | > 200 | 1.9 (7.3) | – | – | |
| CaD3 | – | – | – | – | – | – | |
| Second-generation peptides | CaD21 | – | – | > 200 | 43.9 (1.0) | – | – |
| CaD22 | – | – | > 200 | 34.3 (8.2) | – | – | |
| CaD23 | > 200 | 26.6 (6.5) | 54.6 (11.7) | 69.6 (7.8) | > 200 | 7.1 (3.0) |
The cytotoxicity and cell viability results were obtained after 3 h of treatment whereas hemolytic effect of treatment was examined after 1 h of treatment.
Results are presented in mean (SD) of two independent experiments performed in biological duplicate. Toxicity results of some peptides were missing because their antimicrobial efficacy was poor and hence toxicity was not determined.
LC50: concentration of treatment causing 50% cytotoxicity; Lmax (%): percentage of cytotoxicity at 200 µg/ml treatment concentration; IC50: concentration of treatment causing 50% inhibition of cell viability; Imax (%): percentage of inhibition of cell viability at 200 µg/ml treatment concentration; HC50: concentration of treatment causing 50% hemolysis; Hmax (%): percentage of hemolysis at 200 µg/ml treatment concentration.
Summary of therapeutic index of CaD23 determined based on cytotoxicity, cell viability, and hemolytic results.
| μg/ml | MRSA-OS | MRSA | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MIC | TI | MIC | TI | MIC | TI | MIC | TI | MIC | TI | MIC | TI | MIC | TI | |
| Based on LC50 (= > 200) | 12.5 | > 16 | 25 | > 8 | 25 | > 8 | 50 | > 4 | 12.5 | > 16 | 50 | > 4 | 25 | > 8 |
Based on IC50 (= 55) | 12.5 | 4.4 | 25 | 2.2 | 25 | 2.2 | 50 | 1.1 | 12.5 | 4.4 | 50 | 1.1 | 25 | 2.2 |
| Based on HC50 (= > 200) | 12.5 | > 16 | 25 | > 8 | 25 | > 8 | 50 | > 4 | 12.5 | > 16 | 50 | > 4 | 25 | > 8 |
The minimum inhibitory concentration (MIC) values, based on the results in the presence of full-strength cationic Muller-Hinton broth (caMHB) without salt, and therapeutic index (TI) values are presented in mean values.
MRSA: methicillin-resistant Staphylococcus aureus; OS: ocular surface (clinical isolate); LC50: concentration of treatment causing 50% cytotoxicity; IC50: concentration of treatment causing 50% inhibition of cell viability; HC50: concentration of treatment causing 50% hemolysis.
Figure 3Time-kill kinetics of CaD23 (0.25× MIC and 2× MIC) amikacin (8× and 20× MIC) against S. aureus (SH1000) in cation-adjusted Muller-Hinton broth over 24 h. Phosphate buffer solution (PBS) group serves as the untreated control. “0 min” represents the starting inoculum, which is around 6 log10 CFU/ml. The red dotted horizontal line at 3 log10 CFU/ml signifies the threshold of significant bacterial killing (defined as 99.9% or 3 log10 CFU/ml reduction of the bacterial viability compared to the starting inoculum). Data is presented as mean ± standard deviation (depicted in error bars) of two independent experiments performed in biological duplicate. CaD23 (2× MIC) was able to achieve complete (100%) killing of SH1000 within 30 min of treatment whereas amikacin (8× MIC and 25× MIC) was only able to achieve complete killing of SH1000 within 4 h of treatment. The antimicrobial efficacy of CaD23 and amikacin was maintained at 24 h post-treatment.
Figure 4Time-kill kinetics of CaD23 (4× MIC) and amikacin (8× MIC) against S. aureus (SH1000) in cation-adjusted Muller-Hinton broth and physiological tear salt concentration (150 mM NaCl) over 24 h. Phosphate buffer solution (PBS) group serves as the untreated control. “0 min” represents the starting inoculum, which is around 6 log10 CFU/ml. The red dotted horizontal line at ~ 3 log10 CFU/ml signifies the threshold of significant bacterial killing (defined as 99.9% or 3 log10 CFU/ml reduction of the bacterial viability compared to the starting inoculum). Data is presented as mean ± standard deviation (depicted in error bars) of two independent experiments performed in biological duplicate. CaD23 (4× MIC) was able to achieve complete (100%) killing of SH1000 within 15 min of treatment whereas amikacin (8× MIC) was only able to achieve complete killing of SH1000 within 4 h of treatment. The antimicrobial efficacy of CaD23 and amikacin was maintained at 24 h post-treatment.
Figure 5Multipassage antimicrobial resistance (AMR) assays for CaD23 and amikacin against S. aureus ATCC SA29213 over 10 consecutive passages (days). S. aureus did not develop any AMR against CaD23 after 10 passages whereas it developed significant AMR against amikacin, with a fourfold increase in the MIC after the 2nd passage and a 32-fold increase in the MIC after the 10th passage. Data is presented as mean ± standard deviation (depicted in error bars) of two independent experiments performed in biological duplicate. Some error bars are missing due to small or no standard deviation values.
Figure 6In vivo safety of CaD23 in various concentrations [0.03% (or 300 μg/ml), 0.05% (or 500 μg/ml), and 0.1% (1 mg/ml)] and phosphate buffer solution (PBS) assessed in a murine corneal epithelial wound healing model (n = 4 mice/treatment group). (A) Representative slit-lamp images showing the daily progress of corneal wound healing of each treatment group. The green color-stained area depicts the corneal epithelial defect. Complete corneal re-epithelialization was observed in all treatment groups, except CaD23 0.1% group, by day 3. The images were analyzed using ImageJ software (https://imagej.nih.gov/ij/)[67]. (B) Graphical summary of the progress of corneal re-epithelialization of each treatment group over 3 days. The corneal epithelial wound size at various time points is calculated based on the original 100% wound size at baseline. Data is presented as mean ± standard deviation.
Figure 7In vivo efficacy of CaD23 0.05% (500 μg/ml), levofloxacin 0.5% (positive control) and phosphate buffer solution (PBS; negative control) in a murine S. aureus ATCC SA29213 bacterial keratitis model (n = 5 mice/treatment group). (A) Representative slit-lamp images showing the corneal appearance over 3 days post-infection in each treatment group. Note the significant infiltrative changes of cornea in the PBS group as compared to the CaD23 0.05% and levofloxacin 0.5% groups. (B) Scatter plot showing the bacterial viability of S. aureus (in log10 CFU/ml) after 3 days of treatment. In view of the wide range of results, data is presented as median ± interquartile range. (C) Scatter plot showing the ocular clinical scoring of the clinical appearance of the S. aureus-infected corneas treated by different treatment. The data is presented as median ± interquartile range. The scores are interpreted as follows: 0: Clear cornea or minimal opacity, partially covering the pupil; (b) + 1: Mild opacity, partially/fully covering the pupil; (c) + 2: Dense opacity, partially covering the pupil; (d) + 3: Dense opacity fully covering the pupil; and (e) + 4: Corneal perforation or phthisis.