Literature DB >> 22930834

NIH Image to ImageJ: 25 years of image analysis.

Caroline A Schneider1, Wayne S Rasband, Kevin W Eliceiri.   

Abstract

For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.

Entities:  

Mesh:

Year:  2012        PMID: 22930834      PMCID: PMC5554542          DOI: 10.1038/nmeth.2089

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  12 in total

1.  Affordable image analysis using NIH Image/ImageJ.

Authors:  V Girish; A Vijayalakshmi
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2.  CellProfiler: free, versatile software for automated biological image analysis.

Authors:  Michael R Lamprecht; David M Sabatini; Anne E Carpenter
Journal:  Biotechniques       Date:  2007-01       Impact factor: 1.993

Review 3.  ImageJ for microscopy.

Authors:  Tony J Collins
Journal:  Biotechniques       Date:  2007-07       Impact factor: 1.993

4.  Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Authors:  Lee Kamentsky; Thouis R Jones; Adam Fraser; Mark-Anthony Bray; David J Logan; Katherine L Madden; Vebjorn Ljosa; Curtis Rueden; Kevin W Eliceiri; Anne E Carpenter
Journal:  Bioinformatics       Date:  2011-02-23       Impact factor: 6.937

5.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

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7.  Metadata matters: access to image data in the real world.

Authors:  Melissa Linkert; Curtis T Rueden; Chris Allan; Jean-Marie Burel; Will Moore; Andrew Patterson; Brian Loranger; Josh Moore; Carlos Neves; Donald Macdonald; Aleksandra Tarkowska; Caitlin Sticco; Emma Hill; Mike Rossner; Kevin W Eliceiri; Jason R Swedlow
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Authors:  Arthur Edelstein; Nenad Amodaj; Karl Hoover; Ron Vale; Nico Stuurman
Journal:  Curr Protoc Mol Biol       Date:  2010-10

9.  Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME.

Authors:  Pierre Lindenbaum; Solena Le Scouarnec; Vincent Portero; Richard Redon
Journal:  Bioinformatics       Date:  2011-10-07       Impact factor: 6.937

10.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes.

Authors:  Anne E Carpenter; Thouis R Jones; Michael R Lamprecht; Colin Clarke; In Han Kang; Ola Friman; David A Guertin; Joo Han Chang; Robert A Lindquist; Jason Moffat; Polina Golland; David M Sabatini
Journal:  Genome Biol       Date:  2006-10-31       Impact factor: 13.583

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Journal:  Mol Biol Rep       Date:  2018-12-04       Impact factor: 2.316

3.  Cytotoxic and genotoxic responses of human lung cells to combustion smoke particles of Miscanthus straw, softwood and beech wood chips.

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9.  Volumetric Changes to the Pharynx in Healthy Aging: Consequence for Pharyngeal Swallow Mechanics and Function.

Authors:  Sonja M Molfenter; Charles Lenell; Cathy L Lazarus
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10.  EspH Suppresses Erk by Spatial Segregation from CD81 Tetraspanin Microdomains.

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Journal:  Infect Immun       Date:  2018-09-21       Impact factor: 3.441

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