Literature DB >> 34421216

Rapid head-pose detection for automated slice prescription of fetal-brain MRI.

Malte Hoffmann1,2, Esra Abaci Turk3,4, Borjan Gagoski2,3, Leah Morgan1, Paul Wighton1, M Dylan Tisdall5, Martin Reuter1,2,6, Elfar Adalsteinsson4,7, P Ellen Grant2,3, Lawrence L Wald1,2, André J W van der Kouwe1,2.   

Abstract

In fetal-brain MRI, head-pose changes between prescription and acquisition present a challenge to obtaining the standard sagittal, coronal and axial views essential to clinical assessment. As motion limits acquisitions to thick slices that preclude retrospective resampling, technologists repeat ~55-second stack-of-slices scans (HASTE) with incrementally reoriented field of view numerous times, deducing the head pose from previous stacks. To address this inefficient workflow, we propose a robust head-pose detection algorithm using full-uterus scout scans (EPI) which take ~5 seconds to acquire. Our ~2-second procedure automatically locates the fetal brain and eyes, which we derive from maximally stable extremal regions (MSERs). The success rate of the method exceeds 94% in the third trimester, outperforming a trained technologist by up to 20%. The pipeline may be used to automatically orient the anatomical sequence, removing the need to estimate the head pose from 2D views and reducing delays during which motion can occur.

Entities:  

Keywords:  Fetal MRI; MSER; head-pose detection; scan automation; scan prescription; slice positioning

Year:  2021        PMID: 34421216      PMCID: PMC8372849          DOI: 10.1002/ima.22563

Source DB:  PubMed          Journal:  Int J Imaging Syst Technol        ISSN: 0899-9457            Impact factor:   2.000


  44 in total

1.  Automatic scan prescription for brain MRI.

Authors:  L Itti; L Chang; T Ernst
Journal:  Magn Reson Med       Date:  2001-03       Impact factor: 4.668

2.  A unifying framework for partial volume segmentation of brain MR images.

Authors:  Koen Van Leemput; Frederik Maes; Dirk Vandermeulen; Paul Suetens
Journal:  IEEE Trans Med Imaging       Date:  2003-01       Impact factor: 10.048

3.  Clinical multishot DW-EPI through parallel imaging with considerations of susceptibility, motion, and noise.

Authors:  Stefan Skare; Rexford D Newbould; David B Clayton; Gregory W Albers; Scott Nagle; Roland Bammer
Journal:  Magn Reson Med       Date:  2007-05       Impact factor: 4.668

4.  MRI of the fetal eyes: morphologic and biometric assessment for abnormal development with ultrasonographic and clinicopathologic correlation.

Authors:  Ashley J Robinson; Susan Blaser; Ants Toi; David Chitayat; Sophie Pantazi; Sarah Keating; Sandra Viero; Greg Ryan
Journal:  Pediatr Radiol       Date:  2008-07-17

Review 5.  Challenges in magnetic resonance imaging for suspected acute appendicitis in pregnant patients.

Authors:  Noah G Ditkofsky; Ajay Singh
Journal:  Curr Probl Diagn Radiol       Date:  2015-01-14

6.  Highly accurate inverse consistent registration: a robust approach.

Authors:  Martin Reuter; H Diana Rosas; Bruce Fischl
Journal:  Neuroimage       Date:  2010-07-14       Impact factor: 6.556

7.  Fetal MRI: A Technical Update with Educational Aspirations.

Authors:  Ali Gholipour; Judith A Estroff; Carol E Barnewolt; Richard L Robertson; P Ellen Grant; Borjan Gagoski; Simon K Warfield; Onur Afacan; Susan A Connolly; Jeffrey J Neil; Adam Wolfberg; Robert V Mulkern
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2014-11       Impact factor: 0.481

8.  DeepCut: Object Segmentation From Bounding Box Annotations Using Convolutional Neural Networks.

Authors:  Martin Rajchl; Matthew C H Lee; Ozan Oktay; Konstantinos Kamnitsas; Jonathan Passerat-Palmbach; Wenjia Bai; Mellisa Damodaram; Mary A Rutherford; Joseph V Hajnal; Bernhard Kainz; Daniel Rueckert
Journal:  IEEE Trans Med Imaging       Date:  2016-11-09       Impact factor: 10.048

9.  Automated fetal brain segmentation from 2D MRI slices for motion correction.

Authors:  K Keraudren; M Kuklisova-Murgasova; V Kyriakopoulou; C Malamateniou; M A Rutherford; B Kainz; J V Hajnal; D Rueckert
Journal:  Neuroimage       Date:  2014-07-22       Impact factor: 6.556

10.  Rapid head-pose detection for automated slice prescription of fetal-brain MRI.

Authors:  Malte Hoffmann; Esra Abaci Turk; Borjan Gagoski; Leah Morgan; Paul Wighton; M Dylan Tisdall; Martin Reuter; Elfar Adalsteinsson; P Ellen Grant; Lawrence L Wald; André J W van der Kouwe
Journal:  Int J Imaging Syst Technol       Date:  2021-03-01       Impact factor: 2.000

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  3 in total

Review 1.  Fetal Neuroimaging Updates.

Authors:  Jeffrey N Stout; M Alejandra Bedoya; P Ellen Grant; Judy A Estroff
Journal:  Magn Reson Imaging Clin N Am       Date:  2021-11       Impact factor: 2.266

2.  Rapid head-pose detection for automated slice prescription of fetal-brain MRI.

Authors:  Malte Hoffmann; Esra Abaci Turk; Borjan Gagoski; Leah Morgan; Paul Wighton; M Dylan Tisdall; Martin Reuter; Elfar Adalsteinsson; P Ellen Grant; Lawrence L Wald; André J W van der Kouwe
Journal:  Int J Imaging Syst Technol       Date:  2021-03-01       Impact factor: 2.000

3.  SynthStrip: skull-stripping for any brain image.

Authors:  Andrew Hoopes; Jocelyn S Mora; Adrian V Dalca; Bruce Fischl; Malte Hoffmann
Journal:  Neuroimage       Date:  2022-07-13       Impact factor: 7.400

  3 in total

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