| Literature DB >> 34299682 |
Patrice M Hicks1,2, Elizabeth Au3, William Self2, Benjamin Haaland1, Michael Feehan1,4, Leah A Owen1,2,3, Adam Siedlecki3, Elizabeth Nuttall2, Deborah Harrison2, Andrew L Reynolds3, John H Lillvis3,5, Sandra Sieminski3, Julia P Shulman6, Margarita Barnoya7, Juan Jose Noguera Prera7, Orlando Gonzalez7, Maureen A Murtaugh1,2, Lloyd B Williams8, Michael H Farkas3,5, Alan S Crandall2, Margaret M DeAngelis1,2,3,5.
Abstract
The Mayan population of Guatemala is understudied within eye and vision research. Studying an observational homogenous, geographically isolated population of individuals seeking eye care may identify unique clinical, demographic, environmental and genetic risk factors for blinding eye disease that can inform targeted and effective screening strategies to achieve better and improved health care distribution. This study served to: (a) identify the ocular health needs within this population; and (b) identify any possible modifiable risk factors contributing to disease pathophysiology within this population. We conducted a cross-sectional study with 126 participants. Each participant completed a comprehensive eye examination, provided a blood sample for genetic analysis, and received a structured core baseline interview for a standardized epidemiological questionnaire at the Salama Lions Club Eye Hospital in Salama, Guatemala. Interpreters were available for translation to the patients' native dialect, to assist participants during their visit. We performed a genome-wide association study for ocular disease association on the blood samples using Illumina's HumanOmni2.5-8 chip to examine single nucleotide polymorphism SNPs in this population. After implementing quality control measures, we performed adjusted logistic regression analysis to determine which genetic and epidemiological factors were associated with eye disease. We found that the most prevalent eye conditions were cataracts (54.8%) followed by pseudoexfoliation syndrome (PXF) (24.6%). The population with both conditions was 22.2%. In our epidemiological analysis, we found that eye disease was significantly associated with advanced age. Cataracts were significantly more common among those living in the 10 districts with the least resources. Furthermore, having cataracts was associated with a greater likelihood of PXF after adjusting for both age and sex. In our genetic analysis, the SNP most nominally significantly associated with PXF lay within the gene KSR2 (p < 1 × 10-5). Several SNPs were associated with cataracts at genome-wide significance after adjusting for covariates (p < 5 × 10-8). About seventy five percent of the 33 cataract-associated SNPs lie within 13 genes, with the majority of genes having only one significant SNP (5 × 10-8). Using bioinformatic tools including PhenGenI, the Ensembl genome browser and literature review, these SNPs and genes have not previously been associated with PXF or cataracts, separately or in combination. This study can aid in understanding the prevalence of eye conditions in this population to better help inform public health planning and the delivery of quality, accessible, and relevant health and preventative care within Salama, Guatemala.Entities:
Keywords: cataract; epidemiology; eye care; genetic; genetic epidemiology; global health; isolated population; pseudoexfoliation syndrome
Mesh:
Year: 2021 PMID: 34299682 PMCID: PMC8303577 DOI: 10.3390/ijerph18147231
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Missing values that were imputed for univariate/multivariate epidemiological analysis.
| Demographic | # of Missing Values Imputed |
|---|---|
| Married | 28 |
| Smoker | 9 |
| Outdoor Working Condition | 2 |
| Diabetes | 1 |
| Hypertension | 2 |
| Heart Attack | 1 |
| Asthma | 28 |
| High Cholesterol | 3 |
| Other Heart Condition | 27 |
| Elevation (range) in meters | 17 |
| Low-Resource Department | 17 |
Demographics in the eye examination study participants.
| Demographics | Total Eye Exam Participants ( |
|---|---|
| PXF | 31 (24.6%) |
| Cataracts | 69 (54.8%) |
| Glaucoma | 5 (4.0%) |
| PXF with Glaucoma | 2 (1.6%) |
| PXF with Cataracts | 28 (22.2%) |
| Diabetic Retinopathy | 1 (0.8%) |
| Age-Related Macular Degeneration | 2 (1.6%) |
| Dry AMD—AREDS3 | 1 (0.8%) |
| Peripapillary Atrophy | 1 (0.8%) |
| Pterygium | 4 (3.2%) |
| Age (range) | 65.2 (21.6–96.1) |
| Male Sex | 58 (46.0%) |
Dry AMD—AREDS3 is Dry Age-Related Macular Degeneration Age Related Eye Disease Study.
Age and sex of PXF, cataracts and glaucoma participants.
| Diagnosis | Age (Range) | Male Sex |
|---|---|---|
| PXF ( | 74.3 (59.9–90.4) | 14 (45.2%) |
| Glaucoma ( | 66.4 (53.4–79.4) | 2 (40%) |
| Cataracts ( | 73.4 (42.2–96.1) | 35 (50.7%) |
| PXF + Glaucoma ( | 64.6 (62.1–67.1) | 0 (0%) |
| PXF + Cataracts ( | 74.8 (62.1–90.4) | 12 (42.9%) |
Demographic table for participants used in univariate and multivariate analyses.
| Demographics | Total # of Participants in Adjusted Analyses |
|---|---|
| Age (range) | 64.6 (21.6–96.1) |
| Gender | |
| Male | 55 (45.45%) |
| Female | 66 (54.55%) |
| Married * | 62 (51.24%) |
| Smoker * | 26 (21.49%) |
| Outdoor Working Condition * | 45 (37.19%) |
| Diabetes * | 16 (13.22%) |
| Hypertension * | 31 (25.62%) |
| Heart Attack * | 7 (5.79%) |
| Asthma * | 8 (6.61%) |
| High Cholesterol * | 9 (7.44%) |
| Other Heart Condition | 7 (5.79%) |
| Elevation (range) in meters * | 978.62 (7–2507) |
| Low-Resource Department | 76 (62.81%) |
| Eye Disease/Condition | |
| PXF | 29 (23.97%) |
| Cataracts | 64 (52.89%) |
| PXF + Cataracts | 26 (21.41%) |
* Missing values for some participants—see Appendix A.
Univariate analysis of epidemiological risk factors and eye conditions.
| Characteristic | PXF OR (95% CI) | Cataracts OR (95% CI) | Cataracts + PXF OR (95% CI) |
|---|---|---|---|
| Age | 1.071 (1.030–1.114) | 1.111 (1.066–1.158) | 1.075 (1.031–1.121) |
| Male Sex | 1.161 (0.503–2.680) | 1.478 (0.719–3.041) | 1.037 (0.434–2.475) |
| Married | 0.624 (0.250–1.561) | 0.667 (0.269–1.651) | 0.552 (0.215–1.418) |
| Smoker | 0.597 (0.204–1.744) | 0.859 (0.358–2.062) | 0.683 (0.219–2.126) |
| Diabetes | 1.250 (0.372–4.603) | 2.300 (0.748–7.077) | 1.478 (0.436–5.015) |
| HBP | 1.222 (0.471–3.165) | 1.680 (0.731–3.858) | 1.266 (0.477–3.359) |
| High Cholesterol | 0.450 (0.0044–4.603) | 0.595 (0.158–2.236) | 0.834 (0.116–6.011) |
| Asthma | 2.096 (0.398–11.024) | 2.155 (0.665–6.970) | 5.08 × 10−8 (0-Inf.) |
| Heart Attack | 4.212 (0.885–20.042) | 8.237 × 105 (0-inf) | 5.253 (1.089–25.332) |
| Other Heart Condition | 3.417 (0.848–13.768) | 2.223 (0.601–8.296) | 2.483 (0.309–19.982) |
| Outside Working Conditions | 1.204 (0.514–2.822) | 1.685 (0.800–3.55) | 1.257 (0.520–3.039) |
| Elevation | 1.000 (0.999–1.000) | 1.000 (0.999–1.000) | 1.000 (0.999–1.001) |
| Weight | 0.984 (0.962–1.008) | 0.995 (0.981–1.009) | 0.983 (0.960–1.007) |
| Low Resource | 1.392 (0.423–4.579) | 2.659 (1.068–6.662) | 1.479 (0.414–5.277) |
Multivariate analysis of epidemiological risk factors and eye conditions.
| Characteristic | PXF OR (95% CI) | Cataracts OR (95% CI) | PXF + Cataracts OR (95% CI) |
|---|---|---|---|
| Age | 1.068 (1.024–1.113) | 1.119 (1.071–1.169) | 1.069 (1.025–1.116) |
| Male Sex | - | - | - |
| Married | - | - | - |
| Smoker | - | - | - |
| Diabetes | - | - | - |
| HBP | - | - | - |
| High Cholesterol | - | - | - |
| Asthma | - | - | - |
| Heart Attack | 1.703 (0.316–9.170) | - | 2.147 (0.417–11.058) |
| Other Heart Condition | 3.091 (0.628–15.206) | - | - |
| Outside Working Conditions | - | - | - |
| Elevation | - | - | - |
| Weight | - | - | - |
| Low Resource | - | 3.214 (1.096–9.424) | - |
PXF association with cataracts.
| Univariate | Odds Ratio (95% CI) | |
|---|---|---|
| PXF | 12.292 (3.493–43.249) | <0.001 |
| Multivariate | ||
| PXF | 5.866 (1.559–22.078) | 0.009 |
| Age | 1.102 (1.056–1.149) | < 0.001 |
| Sex | 1.072 (0.429–2.683) | 0.881 |
Associated SNPs with cataracts and PXF.
| Phenotype | SNP | Gene | Alleles | Allele Frequency Cases | Allele Frequency Controls | |
|---|---|---|---|---|---|---|
| Cataracts | rs72636339 | CFAP74 | A > C | C = 0.1190 | C = 0.1915 | 4.978 × 10−8 |
| Cataracts | rs12492375 | FRMD4B | C > T | T = 0.0714 | T = 0.0532 | 4.109 × 10−8 |
| Cataracts | rs6762603 | FRMD4B | G > A | A = 0.0714 | A = 0.0532 | 4.109 × 10−8 |
| Cataracts | rs6790753 | NAALADL2 | C > T | C = 0.2540 | C = 0.2128 | 4.449 × 10−8 |
| Cataracts | rs4833139 | Intergenic | G > A | A = 0.1905 | A = 0.1170 | 4.800 × 10−8 |
| Cataracts | rs79925560 | LOC105377670 | C > T | T = 0.2460 | T = 0.2340 | 4.602 × 10−8 |
| Cataracts | rs2412857 | Intergenic | C > T | T = 0.2540 | T = 0.2128 | 4.139 × 10−8 |
| Cataracts | rs2100686 | Intergenic | G > A | A = 0.4921 | A = 0.3936 | 4.782 × 10−8 |
| Cataracts | rs4862411 | Intergenic | T > C | C = 0.3095 | C = 0.4894 | 4.203 × 10−8 |
| Cataracts | rs2292899 | ACSL1 | A > G | A = 0.3254 | A = 0.5213 | 4.163 × 10−8 |
| Cataracts | rs3815254 | LOC101927668 | T > C | C = 0.3968 | C = 0.5319 | 4.153 × 10−8 |
| Cataracts | rs13247232 | LOC101927668 | A > C | C = 0.4048 | C = 0.5426 | 4.403 × 10−8 |
| Cataracts | rs7789907 | LOC101927668 | C > A | A = 0.3968 | A = 0.5000 | 4.196 × 10−8 |
| Cataracts | rs11766281 | LOC101927668 | A > C | C = 0.4048 | C = 0.5426 | 4.403 × 10−8 |
| Cataracts | rs12700135 | LOC101927668 | A > G | G = 0.4048 | G = 0.5319 | 3.955 × 10−8 |
| Cataracts | rs6957312 | LOC101927668 | T > C | C = 0.4286 | C = 0.5532 | 3.499 ×10−8 |
| Cataracts | rs12667587 | LOC101927668 | C > T | T = 0.4365 | T = 0.5638 | 4.387 ×10−8 |
| Cataracts | rs6980441 | LOC101927668 | G > A | A = 0.4127 | A = 0.5106 | 4.228 ×10−8 |
| Cataracts | rs201711770 | LOC101927668 | G > A | A = 0.4365 | A = 0.5532 | 4.734 ×10−8 |
| Cataracts | rs3102070 | Intergenic | G > A | T = 0.1270 | T = 0.0745 | 4.515 × 10−8 |
| Cataracts | rs71519459 | LINC00968 and | T > C | C = 0.1587 | C = 0.0957 | 4.343 × 10−8 |
| Cataracts | rs1762004 | LOC107984170 | C > T | T = 0.1905 | T = 0.1277 | 4.786 × 10−8 |
| Cataracts | rs2489633 | Intergenic | G > T | C = 0.1905 | C = 0.1277 | 4.786 × 10−8 |
| Cataracts | rs12250991 | CTNNA3 | T > C | C = 0.0952 | C = 0.0319 | 4.826 × 10−8 |
| Cataracts | rs12257968 | CTNNA3 | A > G | G = 0.0952 | G = 0.0319 | 4.826 × 10−8 |
| Cataracts | rs12251222 | CTNNA3 | G > A | A = 0.0952 | A = 0.0319 | 4.147 × 10−8 |
| Cataracts | rs1576479 | Intergenic | A > G | G = 0.2222 | G = 0.1596 | 4.724 × 10−8 |
| Cataracts | rs1576480 | Intergenic | T > C | C = 0.2143 | C = 0.1383 | 4.411 × 10−8 |
| Cataracts | rs7107322 | PRCP | G > A | A = 0.2460 | A = 0.1809 | 4.768 × 10−8 |
| Cataracts | rs60376799 | LOC105369844 | A > G | G = 0.1587 | G = 0.2660 | 4.480 × 10−8 |
| Cataracts | rs16975803 | Intergenic | C > T | T = 0.2222 | T = 0.1596 | 4.903 × 10−8 |
| Cataracts | rs184403357 | ZNF423 | A > T | T = 0.0952 | T = 0.0425 | 4.381 × 10−8 |
| Cataracts | rs2652921 | Intergenic | G > A | G = 0.2619 | G = 0.2065 | 0 |
| PXF * | rs895471 | KSR2 | A > G | G = 0.1552 | G = 0.500 | 8.628 × 10−6 |
* Sex adjusted only.
Sequence kernel association testing analysis.
| Phenotype | Gene | # of SNPs from GWAS | # of SNPs Used for SKAT Analysis | |
|---|---|---|---|---|
| Cataracts | CFAP74 | 12 | 12 | 0.16 |
| Cataracts | FRMD4B | 9 | 9 | 0.19 |
| Cataracts | NAALADL2 | 8 | 8 | 0.033 |
| Cataracts | ACSL1 | 10 | 10 | 0.0007 |
| Cataracts | CTNNA3 | 40 | 40 | 0.30 |
| Cataracts | PRCP | 8 | 8 | 0.09 |
| Cataracts | ZNF423 | 24 | 24 | 0.002 |
| Cataracts | LOC101927668 | 12 | 12 | 0.10 |
| PXF | KSR2 | 26 | 26 | 0.01 |
Reactome pathway analysis.
| Phenotype | Gene(s) | Top-Level Pathways |
|---|---|---|
| Cataracts | ZNF423 | DNA replication |
| PXF | KSR2 | Disease |