Literature DB >> 34089648

Project Baby Bear: Rapid precision care incorporating rWGS in 5 California children's hospitals demonstrates improved clinical outcomes and reduced costs of care.

David Dimmock1, Sara Caylor2, Bryce Waldman2, Wendy Benson2, Christina Ashburner3, Jason L Carmichael3, Jeanne Carroll4, Elaine Cham5, Shimul Chowdhury2, John Cleary6, Arthur D'Harlingue5, A Doshi4, Katarzyna Ellsworth2, Carolina I Galarreta3, Charlotte Hobbs2, Kathleen Houtchens5, Juliette Hunt6, Priscilla Joe5, Maries Joseph3, Robert H Kaplan7, Stephen F Kingsmore2, Jason Knight6, Aaina Kochhar3, Richard G Kronick8, Jolie Limon3, Madelena Martin9, Katherine A Rauen9, Adam Schwarz6, Suma P Shankar9, Rosanna Spicer3, Mario Augusto Rojas3, Ofelia Vargas-Shiraishi6, Kristen Wigby4, Neda Zadeh6, Lauge Farnaes2.   

Abstract

Genetic disorders are a leading contributor to mortality in neonatal and pediatric intensive care units (ICUs). Rapid whole-genome sequencing (rWGS)-based rapid precision medicine (RPM) is an intervention that has demonstrated improved clinical outcomes and reduced costs of care. However, the feasibility of broad clinical deployment has not been established. The objective of this study was to implement RPM based on rWGS and evaluate the clinical and economic impact of this implementation as a first line diagnostic test in the California Medicaid (Medi-Cal) program. Project Baby Bear was a payor funded, prospective, real-world quality improvement project in the regional ICUs of five tertiary care children's hospitals. Participation was limited to acutely ill Medi-Cal beneficiaries who were admitted November 2018 to May 2020, were <1 year old and within one week of hospitalization, or had just developed an abnormal response to therapy. The whole cohort received RPM. There were two prespecified primary outcomes-changes in medical care reported by physicians and changes in the cost of care. The majority of infants were from underserved populations. Of 184 infants enrolled, 74 (40%) received a diagnosis by rWGS that explained their admission in a median time of 3 days. In 58 (32%) affected individuals, rWGS led to changes in medical care. Testing and precision medicine cost $1.7 million and led to $2.2-2.9 million cost savings. rWGS-based RPM had clinical utility and reduced net health care expenditures for infants in regional ICUs. rWGS should be considered early in ICU admission when the underlying etiology is unclear.
Copyright © 2021 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  MediCal; Medicaid; QUALY; comparative effectiveness research; critical care; genetic disease; health outcomes research; neonatal intensive care; pediatrics; quality improvement; quality-adjusted life years; rare disease; real-world care

Mesh:

Year:  2021        PMID: 34089648      PMCID: PMC8322922          DOI: 10.1016/j.ajhg.2021.05.008

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  32 in total

1.  Whole-genome sequencing for identification of Mendelian disorders in critically ill infants: a retrospective analysis of diagnostic and clinical findings.

Authors:  Laurel K Willig; Josh E Petrikin; Laurie D Smith; Carol J Saunders; Isabelle Thiffault; Neil A Miller; Sarah E Soden; Julie A Cakici; Suzanne M Herd; Greyson Twist; Aaron Noll; Mitchell Creed; Patria M Alba; Shannon L Carpenter; Mark A Clements; Ryan T Fischer; J Allyson Hays; Howard Kilbride; Ryan J McDonough; Jamie L Rosterman; Sarah L Tsai; Lee Zellmer; Emily G Farrow; Stephen F Kingsmore
Journal:  Lancet Respir Med       Date:  2015-04-27       Impact factor: 30.700

2.  Association Between Neonatal Intensive Care Unit Admission Rates and Illness Acuity.

Authors:  Joseph Schulman; David Braun; Henry C Lee; Jochen Profit; Grace Duenas; Mihoko V Bennett; Robert J Dimand; Maria Jocson; Jeffrey B Gould
Journal:  JAMA Pediatr       Date:  2018-01-01       Impact factor: 16.193

3.  Feasibility of Ultra-Rapid Exome Sequencing in Critically Ill Infants and Children With Suspected Monogenic Conditions in the Australian Public Health Care System.

Authors:  Sebastian Lunke; Stefanie Eggers; Meredith Wilson; Chirag Patel; Christopher P Barnett; Jason Pinner; Sarah A Sandaradura; Michael F Buckley; Emma I Krzesinski; Michelle G de Silva; Gemma R Brett; Kirsten Boggs; David Mowat; Edwin P Kirk; Lesley C Adès; Lauren S Akesson; David J Amor; Samantha Ayres; Anne Baxendale; Sarah Borrie; Alessandra Bray; Natasha J Brown; Cheng Yee Chan; Belinda Chong; Corrina Cliffe; Martin B Delatycki; Matthew Edwards; George Elakis; Michael C Fahey; Andrew Fennell; Lindsay Fowles; Lyndon Gallacher; Megan Higgins; Katherine B Howell; Lauren Hunt; Matthew F Hunter; Kristi J Jones; Sarah King; Smitha Kumble; Sarah Lang; Maelle Le Moing; Alan Ma; Dean Phelan; Michael C J Quinn; Anna Richards; Christopher M Richmond; Jessica Riseley; Jonathan Rodgers; Rani Sachdev; Simon Sadedin; Luregn J Schlapbach; Janine Smith; Amanda Springer; Natalie B Tan; Tiong Y Tan; Suzanna L Temple; Christiane Theda; Anand Vasudevan; Susan M White; Alison Yeung; Ying Zhu; Melissa Martyn; Stephanie Best; Tony Roscioli; John Christodoulou; Zornitza Stark
Journal:  JAMA       Date:  2020-06-23       Impact factor: 56.272

4.  Rapid Whole Genome Sequencing Has Clinical Utility in Children in the PICU.

Authors:  Erica F Sanford; Michelle M Clark; Lauge Farnaes; Matthew R Williams; James C Perry; Elizabeth G Ingulli; Nathaly M Sweeney; Ami Doshi; Jeffrey J Gold; Benjamin Briggs; Matthew N Bainbridge; Michele Feddock; Kelly Watkins; Shimul Chowdhury; Shareef A Nahas; David P Dimmock; Stephen F Kingsmore; Nicole G Coufal
Journal:  Pediatr Crit Care Med       Date:  2019-11       Impact factor: 3.624

5.  Epidemiologic Trends in Neonatal Intensive Care, 2007-2012.

Authors:  Wade Harrison; David Goodman
Journal:  JAMA Pediatr       Date:  2015-09       Impact factor: 16.193

6.  Use of Exome Sequencing for Infants in Intensive Care Units: Ascertainment of Severe Single-Gene Disorders and Effect on Medical Management.

Authors:  Linyan Meng; Mohan Pammi; Anirudh Saronwala; Pilar Magoulas; Andrew Ray Ghazi; Francesco Vetrini; Jing Zhang; Weimin He; Avinash V Dharmadhikari; Chunjing Qu; Patricia Ward; Alicia Braxton; Swetha Narayanan; Xiaoyan Ge; Mari J Tokita; Teresa Santiago-Sim; Hongzheng Dai; Theodore Chiang; Hadley Smith; Mahshid S Azamian; Laurie Robak; Bret L Bostwick; Christian P Schaaf; Lorraine Potocki; Fernando Scaglia; Carlos A Bacino; Neil A Hanchard; Michael F Wangler; Daryl Scott; Chester Brown; Jianhong Hu; John W Belmont; Lindsay C Burrage; Brett H Graham; Vernon Reid Sutton; William J Craigen; Sharon E Plon; James R Lupski; Arthur L Beaudet; Richard A Gibbs; Donna M Muzny; Marcus J Miller; Xia Wang; Magalie S Leduc; Rui Xiao; Pengfei Liu; Chad Shaw; Magdalena Walkiewicz; Weimin Bi; Fan Xia; Brendan Lee; Christine M Eng; Yaping Yang; Seema R Lalani
Journal:  JAMA Pediatr       Date:  2017-12-04       Impact factor: 16.193

7.  Reporting Guidelines for the Use of Expert Judgement in Model-Based Economic Evaluations.

Authors:  Cynthia P Iglesias; Alexander Thompson; Wolf H Rogowski; Katherine Payne
Journal:  Pharmacoeconomics       Date:  2016-11       Impact factor: 4.981

8.  An RCT of Rapid Genomic Sequencing among Seriously Ill Infants Results in High Clinical Utility, Changes in Management, and Low Perceived Harm.

Authors:  David P Dimmock; Michelle M Clark; Mary Gaughran; Julie A Cakici; Sara A Caylor; Christina Clarke; Michele Feddock; Shimul Chowdhury; Lisa Salz; Cynthia Cheung; Lynne M Bird; Charlotte Hobbs; Kristen Wigby; Lauge Farnaes; Cinnamon S Bloss; Stephen F Kingsmore
Journal:  Am J Hum Genet       Date:  2020-11-05       Impact factor: 11.043

9.  Meta-analysis of the diagnostic and clinical utility of genome and exome sequencing and chromosomal microarray in children with suspected genetic diseases.

Authors:  Michelle M Clark; Zornitza Stark; Lauge Farnaes; Tiong Y Tan; Susan M White; David Dimmock; Stephen F Kingsmore
Journal:  NPJ Genom Med       Date:  2018-07-09       Impact factor: 8.617

10.  Parental interest in genomic sequencing of newborns: enrollment experience from the BabySeq Project.

Authors:  Casie A Genetti; Talia S Schwartz; Jill O Robinson; Grace E VanNoy; Devan Petersen; Stacey Pereira; Shawn Fayer; Hayley A Peoples; Pankaj B Agrawal; Wendi N Betting; Ingrid A Holm; Amy L McGuire; Susan E Waisbren; Timothy W Yu; Robert C Green; Alan H Beggs; Richard B Parad
Journal:  Genet Med       Date:  2018-09-13       Impact factor: 8.822

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  21 in total

Review 1.  Rapid genomic testing for critically ill children: time to become standard of care?

Authors:  Zornitza Stark; Sian Ellard
Journal:  Eur J Hum Genet       Date:  2021-11-08       Impact factor: 4.246

2.  Genetic Testing and Hospital Length of Stay in Neonates With Epilepsy.

Authors:  Heba Akbari; Ashwin Sunderraj; Nelson Sanchez-Pinto; Anne T Berg; Alfred L George; Andrea C Pardo
Journal:  Pediatr Neurol       Date:  2022-06-02       Impact factor: 4.210

3.  Rapid exome sequencing in critically ill infants: implementation in routine care from French regional hospital's perspective.

Authors:  Constance F Wells; Guilaine Boursier; Kevin Yauy; Nathalie Ruiz-Pallares; Déborah Mechin; Valentin Ruault; Mylène Tharreau; Patricia Blanchet; Lucile Pinson; Christine Coubes; Marc Fila; Julien Baleine; Odile Pidoux; Maliha Badr; Christophe Milesi; Gilles Cambonie; Renaud Mesnage; Maëlle Dereure; Olivier Ardouin; Thomas Guignard; David Geneviève; Mouna Barat-Houari; Marjolaine Willems
Journal:  Eur J Hum Genet       Date:  2022-06-22       Impact factor: 5.351

4.  Targeted RNAseq Improves Clinical Diagnosis of Very Early-Onset Pediatric Immune Dysregulation.

Authors:  Kiera Berger; Dalia Arafat; Shanmuganathan Chandrakasan; Scott B Snapper; Greg Gibson
Journal:  J Pers Med       Date:  2022-06-01

5.  Real-world economic evaluation of prospective rapid whole-genome sequencing compared to a matched retrospective cohort of critically ill pediatric patients in the United States.

Authors:  Vakaramoko Diaby; Aram Babcock; Yushi Huang; Richard K Moussa; Paula S Espinal; Michelin Janvier; Diana Soler; Apeksha Gupta; Parul Jayakar; Magaly Diaz-Barbosa; Balagangadhar Totapally; Jun Sasaki; Anuj Jayakar; Daria Salyakina
Journal:  Pharmacogenomics J       Date:  2022-04-18       Impact factor: 3.245

6.  Cost Efficacy of Rapid Whole Genome Sequencing in the Pediatric Intensive Care Unit.

Authors:  Erica Sanford Kobayashi; Bryce Waldman; Branden M Engorn; Katherine Perofsky; Erika Allred; Benjamin Briggs; Chelsea Gatcliffe; Nanda Ramchandar; Jeffrey J Gold; Ami Doshi; Elizabeth G Ingulli; Courtney D Thornburg; Wendy Benson; Lauge Farnaes; Shimul Chowdhury; Seema Rego; Charlotte Hobbs; Stephen F Kingsmore; David P Dimmock; Nicole G Coufal
Journal:  Front Pediatr       Date:  2022-01-24       Impact factor: 3.418

Review 7.  A guide for the diagnosis of rare and undiagnosed disease: beyond the exome.

Authors:  Shruti Marwaha; Joshua W Knowles; Euan A Ashley
Journal:  Genome Med       Date:  2022-02-28       Impact factor: 15.266

8.  Distinct diagnostic trajectories in NBAS-associated acute liver failure highlights the need for timely functional studies.

Authors:  Lauren S Akesson; Rocio Rius; Natasha J Brown; Jeremy Rosenbaum; Sarah Donoghue; Michael Stormon; Charmaine Chai; Esmeralda Bordador; Yiran Guo; Hakon Hakonarson; Alison G Compton; David R Thorburn; Sumudu Amarasekera; Justine Marum; Alisha Monaco; Crystle Lee; Belinda Chong; Sebastian Lunke; Zornitza Stark; John Christodoulou
Journal:  JIMD Rep       Date:  2022-03-15

9.  Ethylmalonic encephalopathy masquerading as meningococcemia.

Authors:  Zornitza Stark; Michael Fahey; Ari Horton; Kai Mun Hong; Dinusha Pandithan; Meredith Allen; Caroline Killick; Stacy Goergen; Amanda Springer; Dean Phelan; Melanie Marty; Rebecca Halligan; Joy Lee; James Pitt; Belinda Chong; John Christodoulou; Sebastian Lunke
Journal:  Cold Spring Harb Mol Case Stud       Date:  2022-03-24

10.  Not Only Diagnostic Yield: Whole-Exome Sequencing in Infantile Cardiomyopathies Impacts on Clinical and Family Management.

Authors:  Laura Pezzoli; Lidia Pezzani; Ezio Bonanomi; Chiara Marrone; Agnese Scatigno; Anna Cereda; Maria Francesca Bedeschi; Angelo Selicorni; Serena Gasperini; Paolo Bini; Silvia Maitz; Carla Maccioni; Cristina Pedron; Lorenzo Colombo; Daniela Marchetti; Matteo Bellini; Anna Rita Lincesso; Loredana Perego; Monica Pingue; Nunzia Della Malva; Giovanna Mangili; Paolo Ferrazzi; Maria Iascone
Journal:  J Cardiovasc Dev Dis       Date:  2021-12-21
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