Literature DB >> 35729264

Rapid exome sequencing in critically ill infants: implementation in routine care from French regional hospital's perspective.

Constance F Wells1, Guilaine Boursier1, Kevin Yauy1,2,3, Nathalie Ruiz-Pallares1, Déborah Mechin1, Valentin Ruault1, Mylène Tharreau1, Patricia Blanchet1, Lucile Pinson1, Christine Coubes1, Marc Fila4, Julien Baleine5, Odile Pidoux5, Maliha Badr5, Christophe Milesi5, Gilles Cambonie5, Renaud Mesnage5, Maëlle Dereure6, Olivier Ardouin7, Thomas Guignard8, David Geneviève1, Mouna Barat-Houari1, Marjolaine Willems9,10,11.   

Abstract

This monocentric study included fifteen children under a year old in intensive care with suspected monogenic conditions for rapid trio exome sequencing (rES) between April 2019 and April 2021. The primary outcome was the time from blood sampling to rapid exome sequencing report to parents. All results were available within 16 days and were reported to parents in or under 16 days in 13 of the 15 individuals (86%). Six individuals (40%) received a diagnosis with rES, two had a genetic condition not diagnosed by rES. Eight individuals had their care impacted by their rES results, four were discharged or died before the results. This small-scale study shows that rES can be implemented in a regional University hospital with rapid impactful diagnosis to improve care in critically ill infants.
© 2022. The Author(s), under exclusive licence to European Society of Human Genetics.

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Year:  2022        PMID: 35729264      PMCID: PMC9436918          DOI: 10.1038/s41431-022-01133-7

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   5.351


  17 in total

1.  Whole-genome sequencing for identification of Mendelian disorders in critically ill infants: a retrospective analysis of diagnostic and clinical findings.

Authors:  Laurel K Willig; Josh E Petrikin; Laurie D Smith; Carol J Saunders; Isabelle Thiffault; Neil A Miller; Sarah E Soden; Julie A Cakici; Suzanne M Herd; Greyson Twist; Aaron Noll; Mitchell Creed; Patria M Alba; Shannon L Carpenter; Mark A Clements; Ryan T Fischer; J Allyson Hays; Howard Kilbride; Ryan J McDonough; Jamie L Rosterman; Sarah L Tsai; Lee Zellmer; Emily G Farrow; Stephen F Kingsmore
Journal:  Lancet Respir Med       Date:  2015-04-27       Impact factor: 30.700

2.  A Randomized, Controlled Trial of the Analytic and Diagnostic Performance of Singleton and Trio, Rapid Genome and Exome Sequencing in Ill Infants.

Authors:  Stephen F Kingsmore; Julie A Cakici; Michelle M Clark; Mary Gaughran; Michele Feddock; Sergey Batalov; Matthew N Bainbridge; Jeanne Carroll; Sara A Caylor; Christina Clarke; Yan Ding; Katarzyna Ellsworth; Lauge Farnaes; Amber Hildreth; Charlotte Hobbs; Kiely James; Cyrielle I Kint; Jerica Lenberg; Shareef Nahas; Lance Prince; Iris Reyes; Lisa Salz; Erica Sanford; Peter Schols; Nathaly Sweeney; Mari Tokita; Narayanan Veeraraghavan; Kelly Watkins; Kristen Wigby; Terence Wong; Shimul Chowdhury; Meredith S Wright; David Dimmock
Journal:  Am J Hum Genet       Date:  2019-09-26       Impact factor: 11.025

3.  MoBiDiC Prioritization Algorithm, a Free, Accessible, and Efficient Pipeline for Single-Nucleotide Variant Annotation and Prioritization for Next-Generation Sequencing Routine Molecular Diagnosis.

Authors:  Kevin Yauy; David Baux; Henri Pegeot; Charles Van Goethem; Charly Mathieu; Thomas Guignard; Raul Juntas Morales; Delphine Lacourt; Martin Krahn; Vilma-Lotta Lehtokari; Gisele Bonne; Sylvie Tuffery-Giraud; Michel Koenig; Mireille Cossée
Journal:  J Mol Diagn       Date:  2018-04-22       Impact factor: 5.568

4.  Feasibility of Ultra-Rapid Exome Sequencing in Critically Ill Infants and Children With Suspected Monogenic Conditions in the Australian Public Health Care System.

Authors:  Sebastian Lunke; Stefanie Eggers; Meredith Wilson; Chirag Patel; Christopher P Barnett; Jason Pinner; Sarah A Sandaradura; Michael F Buckley; Emma I Krzesinski; Michelle G de Silva; Gemma R Brett; Kirsten Boggs; David Mowat; Edwin P Kirk; Lesley C Adès; Lauren S Akesson; David J Amor; Samantha Ayres; Anne Baxendale; Sarah Borrie; Alessandra Bray; Natasha J Brown; Cheng Yee Chan; Belinda Chong; Corrina Cliffe; Martin B Delatycki; Matthew Edwards; George Elakis; Michael C Fahey; Andrew Fennell; Lindsay Fowles; Lyndon Gallacher; Megan Higgins; Katherine B Howell; Lauren Hunt; Matthew F Hunter; Kristi J Jones; Sarah King; Smitha Kumble; Sarah Lang; Maelle Le Moing; Alan Ma; Dean Phelan; Michael C J Quinn; Anna Richards; Christopher M Richmond; Jessica Riseley; Jonathan Rodgers; Rani Sachdev; Simon Sadedin; Luregn J Schlapbach; Janine Smith; Amanda Springer; Natalie B Tan; Tiong Y Tan; Suzanna L Temple; Christiane Theda; Anand Vasudevan; Susan M White; Alison Yeung; Ying Zhu; Melissa Martyn; Stephanie Best; Tony Roscioli; John Christodoulou; Zornitza Stark
Journal:  JAMA       Date:  2020-06-23       Impact factor: 56.272

5.  Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units.

Authors:  Carol Jean Saunders; Neil Andrew Miller; Sarah Elizabeth Soden; Darrell Lee Dinwiddie; Aaron Noll; Noor Abu Alnadi; Nevene Andraws; Melanie LeAnn Patterson; Lisa Ann Krivohlavek; Joel Fellis; Sean Humphray; Peter Saffrey; Zoya Kingsbury; Jacqueline Claire Weir; Jason Betley; Russell James Grocock; Elliott Harrison Margulies; Emily Gwendolyn Farrow; Michael Artman; Nicole Pauline Safina; Joshua Erin Petrikin; Kevin Peter Hall; Stephen Francis Kingsmore
Journal:  Sci Transl Med       Date:  2012-10-03       Impact factor: 17.956

6.  A Prospective Study of Parental Perceptions of Rapid Whole-Genome and -Exome Sequencing among Seriously Ill Infants.

Authors:  Julie A Cakici; David P Dimmock; Sara A Caylor; Mary Gaughran; Christina Clarke; Cynthia Triplett; Michelle M Clark; Stephen F Kingsmore; Cinnamon S Bloss
Journal:  Am J Hum Genet       Date:  2020-11-05       Impact factor: 11.025

7.  Neonatal diagnosis and treatment of Menkes disease.

Authors:  Stephen G Kaler; Courtney S Holmes; David S Goldstein; Jingrong Tang; Sarah C Godwin; Anthony Donsante; Clarissa J Liew; Susumu Sato; Nicholas Patronas
Journal:  N Engl J Med       Date:  2008-02-07       Impact factor: 91.245

8.  Whole genome sequencing reveals that genetic conditions are frequent in intensively ill children.

Authors:  Courtney E French; Isabelle Delon; Helen Dolling; Alba Sanchis-Juan; Olga Shamardina; Karyn Mégy; Stephen Abbs; Topun Austin; Sarah Bowdin; Ricardo G Branco; Helen Firth; David H Rowitch; F Lucy Raymond
Journal:  Intensive Care Med       Date:  2019-03-07       Impact factor: 17.440

9.  Clinical, neuroradiological and molecular characterization of cerebellar dysplasia with cysts (Poretti-Boltshauser syndrome).

Authors:  Alessia Micalizzi; Andrea Poretti; Marta Romani; Monia Ginevrino; Tommaso Mazza; Chiara Aiello; Ginevra Zanni; Bastian Baumgartner; Renato Borgatti; Knut Brockmann; Ana Camacho; Gaetano Cantalupo; Martin Haeusler; Christiane Hikel; Andrea Klein; Giorgia Mandrile; Eugenio Mercuri; Dietz Rating; Romina Romaniello; Filippo Maria Santorelli; Mareike Schimmel; Luigina Spaccini; Serap Teber; Arpad von Moers; Sarah Wente; Andreas Ziegler; Andrea Zonta; Enrico Bertini; Eugen Boltshauser; Enza Maria Valente
Journal:  Eur J Hum Genet       Date:  2016-03-02       Impact factor: 4.246

10.  Rapid whole-exome sequencing facilitates precision medicine in paediatric rare disease patients and reduces healthcare costs.

Authors:  Claudia C Y Chung; Gordon K C Leung; Christopher C Y Mak; Jasmine L F Fung; Mianne Lee; Steven L C Pei; Mullin H C Yu; Vivian C C Hui; Joshua C K Chan; Jeffrey F T Chau; Marcus C Y Chan; Mandy H Y Tsang; Wilfred H S Wong; Joanna Y L Tung; Kin Shing Lun; Yiu Ki Ng; Cheuk Wing Fung; Mabel S C Wong; Rosanna M S Wong; Yu Lung Lau; Godfrey C F Chan; So Lun Lee; Kit San Yeung; Brian H Y Chung
Journal:  Lancet Reg Health West Pac       Date:  2020-07-24
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  1 in total

1.  Guidelines, guidelines everywhere-and still I'm not sure what to do.

Authors:  Alisdair McNeill
Journal:  Eur J Hum Genet       Date:  2022-09       Impact factor: 5.351

  1 in total

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