Literature DB >> 34744166

Rapid genomic testing for critically ill children: time to become standard of care?

Zornitza Stark1,2,3, Sian Ellard4,5.   

Abstract

Rapid genomic testing in critically ill neonatal and paediatric patients has transformed the paradigm of rare disease diagnosis, delivering results in real time to inform patient management. More than 20 studies totalling over 1500 patients from diverse healthcare settings worldwide have now been published, forming a compelling evidence base for healthcare system implementation. We review the reported diagnostic and clinical outcomes, as well as broader evaluations of family and professional experiences, cost effectiveness, implementation challenges and bioethical issues arising from rapid testing. As rapid genomic testing transitions from the research to the healthcare setting to become a 'standard of care' test, there is a need to develop effective service delivery models to support scalability at both the laboratory and clinical level and promote equity of access, prompt test initiation, integrated multidisciplinary input and holistic family support. Harnessing the high level of professional engagement with rapid genomic testing programmes will continue to drive innovation and adoption, while close integration with emerging precision medicine approaches will be necessary to deliver on the promise of reduced infant and child mortality.
© 2021. The Author(s), under exclusive licence to European Society of Human Genetics.

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Year:  2021        PMID: 34744166      PMCID: PMC8821543          DOI: 10.1038/s41431-021-00990-y

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  53 in total

1.  Integrating Genomics into Healthcare: A Global Responsibility.

Authors:  Zornitza Stark; Lena Dolman; Teri A Manolio; Brad Ozenberger; Sue L Hill; Mark J Caulfied; Yves Levy; David Glazer; Julia Wilson; Mark Lawler; Tiffany Boughtwood; Jeffrey Braithwaite; Peter Goodhand; Ewan Birney; Kathryn N North
Journal:  Am J Hum Genet       Date:  2019-01-03       Impact factor: 11.025

2.  Rapid Sequencing-Based Diagnosis of Thiamine Metabolism Dysfunction Syndrome.

Authors:  Mallory J Owen; Anna-Kaisa Niemi; David P Dimmock; Mark Speziale; Mark Nespeca; Kevin K Chau; Luca Van Der Kraan; Meredith S Wright; Christian Hansen; Narayanan Veeraraghavan; Yan Ding; Jerica Lenberg; Shimul Chowdhury; Charlotte A Hobbs; Sergey Batalov; Zhanyang Zhu; Shareef A Nahas; Sheldon Gilmer; Gail Knight; Sebastien Lefebvre; John Reynders; Thomas Defay; Jacqueline Weir; Vicki S Thomson; Louise Fraser; Bryan R Lajoie; Tim K McPhail; Shyamal S Mehtalia; Chris M Kunard; Kevin P Hall; Stephen F Kingsmore
Journal:  N Engl J Med       Date:  2021-06-03       Impact factor: 91.245

3.  Mendelian Gene Discovery: Fast and Furious with No End in Sight.

Authors:  Michael J Bamshad; Deborah A Nickerson; Jessica X Chong
Journal:  Am J Hum Genet       Date:  2019-09-05       Impact factor: 11.025

4.  Rapid Targeted Genomics in Critically Ill Newborns.

Authors:  Cleo C van Diemen; Wilhelmina S Kerstjens-Frederikse; Klasien A Bergman; Tom J de Koning; Birgit Sikkema-Raddatz; Joeri K van der Velde; Kristin M Abbott; Johanna C Herkert; Katharina Löhner; Patrick Rump; Martine T Meems-Veldhuis; Pieter B T Neerincx; Jan D H Jongbloed; Conny M van Ravenswaaij-Arts; Morris A Swertz; Richard J Sinke; Irene M van Langen; Cisca Wijmenga
Journal:  Pediatrics       Date:  2017-10       Impact factor: 7.124

5.  Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders.

Authors:  Sarah E Soden; Carol J Saunders; Laurel K Willig; Emily G Farrow; Laurie D Smith; Josh E Petrikin; Jean-Baptiste LePichon; Neil A Miller; Isabelle Thiffault; Darrell L Dinwiddie; Greyson Twist; Aaron Noll; Bryce A Heese; Lee Zellmer; Andrea M Atherton; Ahmed T Abdelmoity; Nicole Safina; Sarah S Nyp; Britton Zuccarelli; Ingrid A Larson; Ann Modrcin; Suzanne Herd; Mitchell Creed; Zhaohui Ye; Xuan Yuan; Robert A Brodsky; Stephen F Kingsmore
Journal:  Sci Transl Med       Date:  2014-12-03       Impact factor: 17.956

6.  Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units.

Authors:  Carol Jean Saunders; Neil Andrew Miller; Sarah Elizabeth Soden; Darrell Lee Dinwiddie; Aaron Noll; Noor Abu Alnadi; Nevene Andraws; Melanie LeAnn Patterson; Lisa Ann Krivohlavek; Joel Fellis; Sean Humphray; Peter Saffrey; Zoya Kingsbury; Jacqueline Claire Weir; Jason Betley; Russell James Grocock; Elliott Harrison Margulies; Emily Gwendolyn Farrow; Michael Artman; Nicole Pauline Safina; Joshua Erin Petrikin; Kevin Peter Hall; Stephen Francis Kingsmore
Journal:  Sci Transl Med       Date:  2012-10-03       Impact factor: 17.956

7.  Use of Exome Sequencing for Infants in Intensive Care Units: Ascertainment of Severe Single-Gene Disorders and Effect on Medical Management.

Authors:  Linyan Meng; Mohan Pammi; Anirudh Saronwala; Pilar Magoulas; Andrew Ray Ghazi; Francesco Vetrini; Jing Zhang; Weimin He; Avinash V Dharmadhikari; Chunjing Qu; Patricia Ward; Alicia Braxton; Swetha Narayanan; Xiaoyan Ge; Mari J Tokita; Teresa Santiago-Sim; Hongzheng Dai; Theodore Chiang; Hadley Smith; Mahshid S Azamian; Laurie Robak; Bret L Bostwick; Christian P Schaaf; Lorraine Potocki; Fernando Scaglia; Carlos A Bacino; Neil A Hanchard; Michael F Wangler; Daryl Scott; Chester Brown; Jianhong Hu; John W Belmont; Lindsay C Burrage; Brett H Graham; Vernon Reid Sutton; William J Craigen; Sharon E Plon; James R Lupski; Arthur L Beaudet; Richard A Gibbs; Donna M Muzny; Marcus J Miller; Xia Wang; Magalie S Leduc; Rui Xiao; Pengfei Liu; Chad Shaw; Magdalena Walkiewicz; Weimin Bi; Fan Xia; Brendan Lee; Christine M Eng; Yaping Yang; Seema R Lalani
Journal:  JAMA Pediatr       Date:  2017-12-04       Impact factor: 16.193

8.  The NSIGHT1-randomized controlled trial: rapid whole-genome sequencing for accelerated etiologic diagnosis in critically ill infants.

Authors:  Josh E Petrikin; Julie A Cakici; Michelle M Clark; Laurel K Willig; Nathaly M Sweeney; Emily G Farrow; Carol J Saunders; Isabelle Thiffault; Neil A Miller; Lee Zellmer; Suzanne M Herd; Anne M Holmes; Serge Batalov; Narayanan Veeraraghavan; Laurie D Smith; David P Dimmock; J Steven Leeder; Stephen F Kingsmore
Journal:  NPJ Genom Med       Date:  2018-02-09       Impact factor: 8.617

9.  Meeting the challenges of implementing rapid genomic testing in acute pediatric care.

Authors:  Zornitza Stark; Sebastian Lunke; Gemma R Brett; Natalie B Tan; Rachel Stapleton; Smitha Kumble; Alison Yeung; Dean G Phelan; Belinda Chong; Miriam Fanjul-Fernandez; Justine E Marum; Matthew Hunter; Anna Jarmolowicz; Yael Prawer; Jessica R Riseley; Matthew Regan; Justine Elliott; Melissa Martyn; Stephanie Best; Tiong Y Tan; Clara L Gaff; Susan M White
Journal:  Genet Med       Date:  2018-03-15       Impact factor: 8.822

10.  Rapid whole-genome sequencing decreases infant morbidity and cost of hospitalization.

Authors:  Lauge Farnaes; Amber Hildreth; Nathaly M Sweeney; Michelle M Clark; Shimul Chowdhury; Shareef Nahas; Julie A Cakici; Wendy Benson; Robert H Kaplan; Richard Kronick; Matthew N Bainbridge; Jennifer Friedman; Jeffrey J Gold; Yan Ding; Narayanan Veeraraghavan; David Dimmock; Stephen F Kingsmore
Journal:  NPJ Genom Med       Date:  2018-04-04       Impact factor: 8.617

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  8 in total

1.  Rapid exome sequencing in critically ill infants: implementation in routine care from French regional hospital's perspective.

Authors:  Constance F Wells; Guilaine Boursier; Kevin Yauy; Nathalie Ruiz-Pallares; Déborah Mechin; Valentin Ruault; Mylène Tharreau; Patricia Blanchet; Lucile Pinson; Christine Coubes; Marc Fila; Julien Baleine; Odile Pidoux; Maliha Badr; Christophe Milesi; Gilles Cambonie; Renaud Mesnage; Maëlle Dereure; Olivier Ardouin; Thomas Guignard; David Geneviève; Mouna Barat-Houari; Marjolaine Willems
Journal:  Eur J Hum Genet       Date:  2022-06-22       Impact factor: 5.351

2.  A new system for variant classification?

Authors:  Alisdair McNeill
Journal:  Eur J Hum Genet       Date:  2022-02       Impact factor: 5.351

3.  Refinements and considerations for trio whole-genome sequence analysis when investigating Mendelian diseases presenting in early childhood.

Authors:  Courtney E French; Helen Dolling; Karyn Mégy; Alba Sanchis-Juan; Ajay Kumar; Isabelle Delon; Matthew Wakeling; Lucy Mallin; Shruti Agrawal; Topun Austin; Florence Walston; Soo-Mi Park; Alasdair Parker; Chinthika Piyasena; Kimberley Bradbury; Sian Ellard; David H Rowitch; F Lucy Raymond
Journal:  HGG Adv       Date:  2022-04-25

4.  Ethylmalonic encephalopathy masquerading as meningococcemia.

Authors:  Zornitza Stark; Michael Fahey; Ari Horton; Kai Mun Hong; Dinusha Pandithan; Meredith Allen; Caroline Killick; Stacy Goergen; Amanda Springer; Dean Phelan; Melanie Marty; Rebecca Halligan; Joy Lee; James Pitt; Belinda Chong; John Christodoulou; Sebastian Lunke
Journal:  Cold Spring Harb Mol Case Stud       Date:  2022-03-24

5.  Neonatal Bartter syndrome diagnosed by rapid genomics following low risk pre-conception carrier screening.

Authors:  Thomas A Forbes; Jane Wallace; Smitha Kumble; Martin B Delatycki; Zornitza Stark
Journal:  J Paediatr Child Health       Date:  2022-03-29       Impact factor: 1.929

6.  Measures of Utility Among Studies of Genomic Medicine for Critically Ill Infants: A Systematic Review.

Authors:  Katharine Press Callahan; Rebecca Mueller; John Flibotte; Emily A Largent; Chris Feudtner
Journal:  JAMA Netw Open       Date:  2022-08-01

7.  Biallelic Variants in PYROXD2 Cause a Severe Infantile Metabolic Disorder Affecting Mitochondrial Function.

Authors:  Nicole J Van Bergen; Daniella H Hock; Lucy Spencer; Sean Massey; Tegan Stait; Zornitza Stark; Sebastian Lunke; Ain Roesley; Heidi Peters; Joy Yaplito Lee; Anna Le Fevre; Oliver Heath; Cristina Mignone; Joseph Yuan-Mou Yang; Monique M Ryan; Colleen D'Arcy; Margot Nash; Sile Smith; Nikeisha J Caruana; David R Thorburn; David A Stroud; Susan M White; John Christodoulou; Natasha J Brown
Journal:  Int J Mol Sci       Date:  2022-01-17       Impact factor: 5.923

8.  Ethical Considerations for Equitable Access to Genomic Sequencing for Critically Ill Neonates in the United States.

Authors:  Kristen P Fishler; Joshua C Euteneuer; Luca Brunelli
Journal:  Int J Neonatal Screen       Date:  2022-03-21
  8 in total

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