Literature DB >> 34016981

Autocatalytic and oscillatory reaction networks that form guanidines and products of their cyclization.

Alexander I Novichkov1, Anton I Hanopolskyi1, Xiaoming Miao1, Linda J W Shimon2, Yael Diskin-Posner2, Sergey N Semenov3.   

Abstract

Autocatalytic and oscillatory networks of organic reactions are important for designing life-inspired materials and for better understanding the emergence of life on Earth; however, the diversity of the chemistries of these reactions is limited. In this work, we present the thiol-assisted formation of guanidines, which has a mechanism analogous to that of native chemical ligation. Using this reaction, we designed autocatalytic and oscillatory reaction networks that form substituted guanidines from thiouronium salts. The thiouronium salt-based oscillator show good stability of oscillations within a broad range of experimental conditions. By using nitrile-containing starting materials, we constructed an oscillator where the concentration of a bicyclic derivative of dihydropyrimidine oscillates. Moreover, the mixed thioester and thiouronium salt-based oscillator show unique responsiveness to chemical cues. The reactions developed in this work expand our toolbox for designing out-of-equilibrium chemical systems and link autocatalytic and oscillatory chemistry to the synthesis of guanidinium derivatives and the products of their transformations including analogs of nucleobases.

Entities:  

Year:  2021        PMID: 34016981     DOI: 10.1038/s41467-021-23206-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  52 in total

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Journal:  Cell       Date:  2002-05-03       Impact factor: 41.582

Review 2.  Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.

Authors:  John J Tyson; Katherine C Chen; Bela Novak
Journal:  Curr Opin Cell Biol       Date:  2003-04       Impact factor: 8.382

3.  Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro.

Authors:  Masato Nakajima; Keiko Imai; Hiroshi Ito; Taeko Nishiwaki; Yoriko Murayama; Hideo Iwasaki; Tokitaka Oyama; Takao Kondo
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

4.  Control of oscillating glycolysis of yeast by stochastic, periodic, and steady source of substrate: a model and experimental study.

Authors:  A Boiteux; A Goldbeter; B Hess
Journal:  Proc Natl Acad Sci U S A       Date:  1975-10       Impact factor: 11.205

5.  Modeling the cell division cycle: cdc2 and cyclin interactions.

Authors:  J J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

6.  Modeling the cell cycle: why do certain circuits oscillate?

Authors:  James E Ferrell; Tony Yu-Chen Tsai; Qiong Yang
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 7.  Protocells and RNA Self-Replication.

Authors:  Gerald F Joyce; Jack W Szostak
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-09-04       Impact factor: 10.005

Review 8.  An atlas of cellular oscillators.

Authors:  P E Rapp
Journal:  J Exp Biol       Date:  1979-08       Impact factor: 3.312

Review 9.  Artificial Cells: Synthetic Compartments with Life-like Functionality and Adaptivity.

Authors:  Bastiaan C Buddingh'; Jan C M van Hest
Journal:  Acc Chem Res       Date:  2017-01-17       Impact factor: 22.384

10.  Bistability and oscillations in the Huang-Ferrell model of MAPK signaling.

Authors:  Liang Qiao; Robert B Nachbar; Ioannis G Kevrekidis; Stanislav Y Shvartsman
Journal:  PLoS Comput Biol       Date:  2007-08-06       Impact factor: 4.475

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  1 in total

1.  Memory, switches, and an OR-port through bistability in chemically fueled crystals.

Authors:  Fabian Schnitter; Benedikt Rieß; Christian Jandl; Job Boekhoven
Journal:  Nat Commun       Date:  2022-05-20       Impact factor: 17.694

  1 in total

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