Literature DB >> 33849440

Efficacy of 16S rRNA variable regions high-resolution melt analysis for bacterial pathogens identification in periprosthetic joint infections.

Samaneh Bourbour1, Mohammad Emaneini1, Mahmoud Jabalameli2, Seyed Mohammad Javad Mortazavi3, Mohamad Naghi Tahmasebi3, Amirheckmat Taghizadeh4, Arash Sharafatvaziri3, Reza Beigverdi1, Fereshteh Jabalameli5.   

Abstract

BACKGROUND: Accurate and rapid identification of microorganisms causing periprosthetic joint infections (PJIs) are necessary for choosing an appropriate antibiotic therapy. Therefore, molecular techniques are suggested for diagnosis in suspected PJIs. The Broad-range PCR and High-Resolution Melt Analysis (HRMA) were evaluated for the identification of causative organisms of PJIs in this study.
RESULTS: For 47 of 63 specimens, both the culture and broad-range PCR were positive. The culture was found to be able of organism's detection in 74.6% (47/63) of patients. Of 47 positive cultures, 11 (23.4%) were polymicrobial and 36 (76.59%) were monomicrobial cultures, in which 34 (91.89%) cases were detected by HRM assay. The sensitivity, specificity of HRMA vs monomicrobial culture were 91.89, 93.75%, respectively. The sensitivity, specificity of total HRMA (mono + poly) vs culture were 82.92, 93.75%.
CONCLUSIONS: HRM assay coupled with broad-range PCR are effective screening, rapid, and relatively cost-effective methods for discrimination of PJIs especially in aiding culture method. Using computer programs such as the Matlab-2018b program for HRM data analysis is also valuable and helpful in diagnosis.

Entities:  

Keywords:  Broad-range PCR; High-resolution melt analysis; Pathogens; Periprosthetic joint infections

Year:  2021        PMID: 33849440     DOI: 10.1186/s12866-021-02164-8

Source DB:  PubMed          Journal:  BMC Microbiol        ISSN: 1471-2180            Impact factor:   3.605


  32 in total

Review 1.  Microbiological applications of high-resolution melting analysis.

Authors:  Steven Y C Tong; Philip M Giffard
Journal:  J Clin Microbiol       Date:  2012-08-08       Impact factor: 5.948

2.  Culture-negative periprosthetic joint infection does not preclude infection control.

Authors:  Ronald Huang; Chi-Chien Hu; Bahar Adeli; Javad Mortazavi; Javad Parvizi
Journal:  Clin Orthop Relat Res       Date:  2012-10       Impact factor: 4.176

Review 3.  Total hip arthroplasty: areview of advances, advantages and limitations.

Authors:  Xin-Wei Liu; Ying Zi; Liang-Bi Xiang; Yu Wang
Journal:  Int J Clin Exp Med       Date:  2015-01-15

4.  Application of a 16S rRNA PCR-high-resolution melt analysis assay for rapid detection of Salmonella Bacteremia.

Authors:  Kevin Jeng; Samuel Yang; Helen Won; Charlotte A Gaydos; Yu-Hsiang Hsieh; Alex Kecojevic; Karen C Carroll; Justin Hardick; Richard E Rothman
Journal:  J Clin Microbiol       Date:  2012-01-11       Impact factor: 5.948

5.  Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing.

Authors:  Teresa L Street; Nicholas D Sanderson; Bridget L Atkins; Andrew J Brent; Kevin Cole; Dona Foster; Martin A McNally; Sarah Oakley; Leon Peto; Adrian Taylor; Tim E A Peto; Derrick W Crook; David W Eyre
Journal:  J Clin Microbiol       Date:  2017-05-10       Impact factor: 5.948

6.  Development of a new High Resolution Melting (HRM) assay for identification and differentiation of Mycobacterium tuberculosis complex samples.

Authors:  Patricia Landolt; Roger Stephan; Simone Scherrer
Journal:  Sci Rep       Date:  2019-02-12       Impact factor: 4.379

7.  Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis.

Authors:  Bo Yang; Yong Wang; Pei-Yuan Qian
Journal:  BMC Bioinformatics       Date:  2016-03-22       Impact factor: 3.169

8.  Failure of the first step of two-stage revision due to polymicrobial prosthetic joint infection of the hip.

Authors:  Svetlana Bozhkova; Rashid Tikhilov; Dmitry Labutin; Alexey Denisov; Igor Shubnyakov; Vadim Razorenov; Vasilii Artyukh; Anna Rukina
Journal:  J Orthop Traumatol       Date:  2016-07-07

Review 9.  A Review of the Literature on Culture-Negative Periprosthetic Joint Infection: Epidemiology, Diagnosis and Treatment.

Authors:  Hong-Kwon Yoon; Seong-Hee Cho; Dong-Yeong Lee; Byeong-Hun Kang; Sang-Hyuk Lee; Dong-Gyu Moon; Dong-Hee Kim; Dae-Cheol Nam; Sun-Chul Hwang
Journal:  Knee Surg Relat Res       Date:  2017-09-01

10.  Total knee and hip arthroplasty: the reality of assistance in Brazilian public health care.

Authors:  Marcio de Castro Ferreira; Julio Cesar Pinto Oliveira; Flavio Ferreira Zidan; Carlos Eduardo da Silveira Franciozi; Marcus Vinicius Malheiros Luzo; Rene Jorge Abdalla
Journal:  Rev Bras Ortop       Date:  2018-06-08
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  2 in total

1.  Multiplex detection of five common respiratory pathogens from bronchoalveolar lavages using high resolution melting curve analysis.

Authors:  Jaber Ghorbani; Farhad Bonakdar Hashemi; Fereshteh Jabalameli; Mohammad Emaneini; Reza Beigverdi
Journal:  BMC Microbiol       Date:  2022-05-19       Impact factor: 4.465

Review 2.  Molecular Approach for the Laboratory Diagnosis of Periprosthetic Joint Infections.

Authors:  Giulia Gatti; Francesca Taddei; Martina Brandolini; Andrea Mancini; Agnese Denicolò; Francesco Congestrì; Martina Manera; Valentina Arfilli; Arianna Battisti; Silvia Zannoli; Maria Michela Marino; Anna Marzucco; Manuela Morotti; Laura Grumiro; Agata Scalcione; Giorgio Dirani; Monica Cricca; Vittorio Sambri
Journal:  Microorganisms       Date:  2022-08-05
  2 in total

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