| Literature DB >> 33810064 |
Faven Butler1, Ali Alghubayshi1, Youssef Roman1.
Abstract
Gout is an inflammatory condition caused by elevated serum urate (SU), a condition known as hyperuricemia (HU). Genetic variations, including single nucleotide polymorphisms (SNPs), can alter the function of urate transporters, leading to differential HU and gout prevalence across different populations. In the United States (U.S.), gout prevalence differentially affects certain racial groups. The objective of this proposed analysis is to compare the frequency of urate-related genetic risk alleles between Europeans (EUR) and the following major racial groups: Africans in Southwest U.S. (ASW), Han-Chinese (CHS), Japanese (JPT), and Mexican (MXL) from the 1000 Genomes Project. The Ensembl genome browser of the 1000 Genomes Project was used to conduct cross-population allele frequency comparisons of 11 SNPs across 11 genes, physiologically involved and significantly associated with SU levels and gout risk. Gene/SNP pairs included: ABCG2 (rs2231142), SLC2A9 (rs734553), SLC17A1 (rs1183201), SLC16A9 (rs1171614), GCKR (rs1260326), SLC22A11 (rs2078267), SLC22A12 (rs505802), INHBC (rs3741414), RREB1 (rs675209), PDZK1 (rs12129861), and NRXN2 (rs478607). Allele frequencies were compared to EUR using Chi-Square or Fisher's Exact test, when appropriate. Bonferroni correction for multiple comparisons was used, with p < 0.0045 for statistical significance. Risk alleles were defined as the allele that is associated with baseline or higher HU and gout risks. The cumulative HU or gout risk allele index of the 11 SNPs was estimated for each population. The prevalence of HU and gout in U.S. and non-US populations was evaluated using published epidemiological data and literature review. Compared with EUR, the SNP frequencies of 7/11 in ASW, 9/11 in MXL, 9/11 JPT, and 11/11 CHS were significantly different. HU or gout risk allele indices were 5, 6, 9, and 11 in ASW, MXL, CHS, and JPT, respectively. Out of the 11 SNPs, the percentage of risk alleles in CHS and JPT was 100%. Compared to non-US populations, the prevalence of HU and gout appear to be higher in western world countries. Compared with EUR, CHS and JPT populations had the highest HU or gout risk allele frequencies, followed by MXL and ASW. These results suggest that individuals of Asian descent are at higher HU and gout risk, which may partly explain the nearly three-fold higher gout prevalence among Asians versus Caucasians in ambulatory care settings. Furthermore, gout remains a disease of developed countries with a marked global rising.Entities:
Keywords: Asians; epidemiology; genetics; gout; health disparities; hyperuricemia; race
Year: 2021 PMID: 33810064 PMCID: PMC8005056 DOI: 10.3390/jpm11030231
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Overview of targeted single nucleotide polymorphisms (SNPs).
| Gene (Protein) | Protein Function | SNP * | SNP Effect | References |
|---|---|---|---|---|
| Major urate efflux transporter expressed in the kidney, liver, and gastrointestinal tract. | rs2231142 (G > | Missense variant resulting in Q141K (Glu141Lys) amino acid substitution leading to a reduction in ABCG2-mediated urate transport, urate under-excretion, hyperuricemia, and gout. | [ | |
| High-capacity urate, fructose, and glucose transporter expressed in liver, kidney, chondrocytes tissues shown to be strongly associated with hyperuricemia and gout. | rs734553 | Intronic variant associated with increased susceptibility to gout due to altered transporter affinity for urate. | [ | |
| Monocarboxylic acid transporter protein across cell membranes. | rs1171614 | 5′ untranslated region (UTR) variant associated with lower serum urate concentrations in individuals of European ancestry. | [ | |
| Uric acid transport protein localized at the apical membrane of the renal proximal tubule. | rs1183201 | Intronic variant reported being in high linkage disequilibrium (r2 = 0.97) with rs1165205, an intronic SNP in | [ | |
| An organic anion-dicarboxylate exchanger mediates transport across the apical membrane of the kidney. | rs2078267 | Noncoding transcript exon variant associated with lower SU levels in individuals of European ancestry. | [ | |
| Major urate transporter that mediates the non-voltage dependent exchange of urate for several organic anions, localized at the apical membrane of the renal proximal tubule | rs505802 | Intergenic variant associated with lower serum urate concentrations in individuals of European ancestry. | [ | |
| Glucokinase regulator associated with metabolic traits such as insulin resistance that may be linked to urate concentrations | rs1260326 | Missense variant that causes a Leu446Pro amino acid substitution within the glucokinase regulatory protein gene. Associated with lower fasting glucose levels and higher risk for elevated triglyceride levels, SU, and gout (OR = 1.39, 95%CI 1.23;1.57). | [ | |
| Member of the transforming growth factor ß superfamily that may inhibit activin A signaling, affecting a variety of biologic functions including pituitary hormone secretion and insulin secretion. | rs3741414 | 3′ untranslated region (UTR) variant was reported to interact with OAT4, URAT1, and NTP1 via their C-terminal PDZ motifs and was found to have an association with SU levels. | [ | |
| Zinc finger transcription factor that binds to gene promoters and regulates calcitonin gene and androgen receptor. | rs675209 | Intergenic variant associated with a higher risk for gout in individuals of European ancestry. | [ | |
| Scaffolding protein forms a bidirectional urate transport system to maintain balanced urate levels at the apical membrane of renal proximal tubules. | rs12129861 | Intergenic variant inked with lower serum urate concentrations in individuals of European ancestry. | [ | |
| Member of the neurexin gene family that serves as a cell adhesion molecule. | rs478607 | Missense variant associated with higher serum urate concentrations in individuals of Chinese descent. | [ |
* Bolded letter allele indicates the risk allele, which is defined as the allele that is associated with baseline or higher risk for HU or gout.
Allele frequencies comparisons across populations.
| Gene (SNP) | Variant Type | Allele * | EUR | ASW | CHS | JPT | MXL | Gout/Urate Effect |
|---|---|---|---|---|---|---|---|---|
| missense | G | 90.6 (911) | 92.6 (113) | 74.3 (156) * | 67.8 (141) * | 79.7 (102) * | ↑ | |
| intronic | G | 24.5 (246) | 46.7 (57) * | 1.4 (3) * | 0.5 (1)* | 38.3 (49) * | ↑ | |
| intronic | A | 46.1 (464) | 12.3 (15) * | 11.9 (25) * | 16.3 (34) * | 29.7 (38) * | ↓ | |
| intronic | T | 24.2 (244) | 23 (28) | — | — | 10.2 (13) * | ↓ | |
| missense | ↑ | |||||||
| non-coding transcript exon | ↓ | |||||||
| intergenic | T | 70.7 (711) | 35.2 (43) * | 29.9 (48) * | 17.8 (37) * | 50 (64) * | ↓ | |
| 3 prime UTR | ↓ | |||||||
| intergenic variant | ↑ | |||||||
| intergenic | ↓ | |||||||
| Intronic | ↓ |
* Bolded letter allele indicates the risk allele, which is defined as the allele that is associated with baseline or higher risk for HU or gout. * Indicates statistical significance p < 0.0045 between population X and reference group (EUR). EUR: European, ASW: Africans in Southwest U.S; CHS: Southern Han-Chinese; JPT: Japanese in Tokyo, MXL; Mexicans in Los Angeles, CA, USA.
Genotype frequencies comparisons across populations.
| Gene (SNP) * | Genotype | EUR (Reference) | ASW | CHS | JPT | MXL |
|---|---|---|---|---|---|---|
| GG | 82.3 (414) | 85.2 (52) | 56.2 (59) * | 43.3 (45) * | 64.1 (41) * | |
| GG | 5.6 (28) | 24.6 (15) * | — | — | 17.2 (11) | |
| AA | 23.1 (116) | 1.6 (1) * | 1.9(2) * | 3.8 (4) * | 10.9 (7) | |
| TT | 5.8 (29) | 4.9 (3) | — | — | — | |
| TT | 15.7 (79) | 80.3 (49) * | 20 (21) | 35.6 (37) * | 14.1 (9) | |
| CC | 23.9 (120) | 72.1 (44) * | 96.2 (10) | 96.2 (100) * | 60.9 (39) * | |
| TT | 51.3 (258) | 13.1 (8) * | 6.7 (7) * | 1 (1) * | 23.4 (15) | |
| CC | 65 (327) | 75.4 (46) | 83.8 (88) | 89.4 (93) * | 29.7 (19) * | |
| TT | 8.5 (43) | 19.7 (12) | 84.8 (89) * | 85.6 (89) * | 23.4 (15) | |
| TT | 26.6 (134) | 52.5 (32) * | 71.4 (75) * | 89.4 (93) * | 35.9 (23) | |
| GG | 2.6 (13) | 19.7 (12) * | 3.8 (4) | 4.8 (5) | 4.7 (3) |
* Bold letter allele indicates the risk allele, which is defined as the allele that is associated with baseline or higher risk for HU or gout. * Indicates statistical significance p < 0.0045 between population of interest and reference group (EUR). EUR: European, ASW: Africans in Southwest U.S.; CHS: Southern Han-Chinese; JPT: Japanese in Tokyo; MXL: Mexicans in Los Angeles, CA, USA.
Summary of cumulative risk alleles across major populations.
| EUR | ASW | CHS | JPT | MXL | |
|---|---|---|---|---|---|
| Count of significantly different alleles (Ns) from EUR | Reference (11 SNPs) | 63.6% (7/11) | 81.8% (9/11) | 100% (11/11) | 72.7% (8/11) |
| Cumulative risk allele * index | 5 | 9 | 11 | 6 | |
| Percentage of risk allele * | 71.4% (5/7) | 100.0% (9/9) | 100.0% (11/11) | 75.0% (6/8) |
* Risk allele is defined as an allele that is associated with baseline or higher risk for hyperuricemia (HU) or gout.
Prevalence (%) of hyperuricemia and gout across non-U.S. populations.
| European a | African b | Chinese c | Japanese d | Mexican f | |
|---|---|---|---|---|---|
| HU | 11.9–25.0 | 30.6 | 13.1–13.3 | 26.8 | 20.6 |
| Gout | 0.3–4.7 | -- | 1.14 | 0.09–1.6 | 0.4 |
| References | [ | [ | [ | [ | [ |
a Based on HU prevalence in adult men and women within Irish Health System [38] and Italian Primary Care database in 2009 [39], gout prevalence data derived from Germany, Italy, France, Portugal, UK, and Greece [30]. b Based on a study population of 85 African men and women conducted in Southeast Gabon [36]. c Based on the Shandong coastal cities of Eastern Chinese [40] and systematic review of HU in mainland China [40,41]. d Based on HU and physician-diagnosed gout prevalence in Japanese individuals based on fiscal year 2014 [42,43]. f Based on Community Oriented Program for Control of Rheumatic Diseases (COPCORD) questionnaires in suburban areas of Mexico [44,45].
Prevalence (%) of hyperuricemia and gout across U.S. populations a.
| Caucasian | African-American | Asian-American | Mexican-American/Hispanic | |
|---|---|---|---|---|
| HU | 15.6 | 15.1 | 47 b | 11.3 |
| Gout | 4.0 | 4.8 | 5.1–6.5 c | 2.1 |
| References | [ | [ | [ | [ |
a Values for Caucasian, African-American, and Hispanics are based on the 2015–2016 NHANES [6]. b Based on a Hmong study, 27 out of 57 participants, predominantly women with SU ≥ 6mg/dl [13]. c Self-reported gout diagnosis in a Hmong cohort (n = 619) living in the U.S. [12].