Literature DB >> 33738060

Trends in Hit-to-Lead Optimization Following DNA-Encoded Library Screens.

Christopher A Reiher1, David P Schuman2, Nicholas Simmons2, Scott E Wolkenberg1.   

Abstract

DNA-encoded library (DEL) screens have emerged as a powerful hit-finding tool for a number of biological targets. In this Innovations article, we review published hit-to-lead optimization studies following DEL screens. Trends in molecular property changes from hit to lead are identified, and specific optimization tactics are exemplified in case studies. Across the studies, physicochemical property and structural changes post-DEL screening are similar to those which occur during hit-to-lead optimization following high throughputscreens (HTS). However, unique aspects of DEL-the combinatorial synthetic methods which enable DEL synthesis and the linker effects at the DNA attachment point-impact the strategies and outcomes of hit-to-lead optimizations.
© 2021 The Authors. Published by American Chemical Society.

Entities:  

Year:  2021        PMID: 33738060      PMCID: PMC7957921          DOI: 10.1021/acsmedchemlett.0c00615

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  32 in total

1.  Cell-Based Selection Expands the Utility of DNA-Encoded Small-Molecule Library Technology to Cell Surface Drug Targets: Identification of Novel Antagonists of the NK3 Tachykinin Receptor.

Authors:  Zining Wu; Todd L Graybill; Xin Zeng; Michael Platchek; Jean Zhang; Vera Q Bodmer; David D Wisnoski; Jianghe Deng; Frank T Coppo; Gang Yao; Alex Tamburino; Genaro Scavello; G Joseph Franklin; Sibongile Mataruse; Katie L Bedard; Yun Ding; Jing Chai; Jennifer Summerfield; Paolo A Centrella; Jeffrey A Messer; Andrew J Pope; David I Israel
Journal:  ACS Comb Sci       Date:  2015-12-03       Impact factor: 3.784

2.  Discovery of Potent and Selective Inhibitors for ADAMTS-4 through DNA-Encoded Library Technology (ELT).

Authors:  Yun Ding; Heather O'Keefe; Jennifer L DeLorey; David I Israel; Jeffrey A Messer; Cynthia H Chiu; Steven R Skinner; Rosalie E Matico; Monique F Murray-Thompson; Fan Li; Matthew A Clark; John W Cuozzo; Christopher Arico-Muendel; Barry A Morgan
Journal:  ACS Med Chem Lett       Date:  2015-07-07       Impact factor: 4.345

3.  The future of high-throughput screening.

Authors:  Lorenz M Mayr; Peter Fuerst
Journal:  J Biomol Screen       Date:  2008-07

Review 4.  Impact of high-throughput screening in biomedical research.

Authors:  Ricardo Macarron; Martyn N Banks; Dejan Bojanic; David J Burns; Dragan A Cirovic; Tina Garyantes; Darren V S Green; Robert P Hertzberg; William P Janzen; Jeff W Paslay; Ulrich Schopfer; G Sitta Sittampalam
Journal:  Nat Rev Drug Discov       Date:  2011-03       Impact factor: 84.694

Review 5.  Increasing the delivery of next generation therapeutics from high throughput screening libraries.

Authors:  Mark J Wigglesworth; David C Murray; Carolyn J Blackett; Michael Kossenjans; J Willem M Nissink
Journal:  Curr Opin Chem Biol       Date:  2015-04-20       Impact factor: 8.822

6.  The Discovery of in Vivo Active Mitochondrial Branched-Chain Aminotransferase (BCATm) Inhibitors by Hybridizing Fragment and HTS Hits.

Authors:  Sophie M Bertrand; Nicolas Ancellin; Benjamin Beaufils; Ryan P Bingham; Jennifer A Borthwick; Anne-Bénédicte Boullay; Eric Boursier; Paul S Carter; Chun-wa Chung; Ian Churcher; Nerina Dodic; Marie-Hélène Fouchet; Charlène Fournier; Peter L Francis; Laura A Gummer; Kenny Herry; Andrew Hobbs; Clare I Hobbs; Paul Homes; Craig Jamieson; Edwige Nicodeme; Stephen D Pickett; Iain H Reid; Graham L Simpson; Lisa A Sloan; Sarah E Smith; Donald O'N Somers; Claus Spitzfaden; Colin J Suckling; Klara Valko; Yoshiaki Washio; Robert J Young
Journal:  J Med Chem       Date:  2015-07-02       Impact factor: 7.446

7.  Chemical Space of DNA-Encoded Libraries.

Authors:  Raphael M Franzini; Cassie Randolph
Journal:  J Med Chem       Date:  2016-02-25       Impact factor: 7.446

8.  Designing DNA Encoded Libraries of Diverse Products in a Focused Property Space.

Authors:  Hongyao Zhu; Mark E Flanagan; Robert V Stanton
Journal:  J Chem Inf Model       Date:  2019-11-14       Impact factor: 4.956

9.  Machine Learning on DNA-Encoded Libraries: A New Paradigm for Hit Finding.

Authors:  Kevin McCloskey; Eric A Sigel; Steven Kearnes; Ling Xue; Xia Tian; Dennis Moccia; Diana Gikunju; Sana Bazzaz; Betty Chan; Matthew A Clark; John W Cuozzo; Marie-Aude Guié; John P Guilinger; Christelle Huguet; Christopher D Hupp; Anthony D Keefe; Christopher J Mulhern; Ying Zhang; Patrick Riley
Journal:  J Med Chem       Date:  2020-06-11       Impact factor: 7.446

10.  Denoising DNA Encoded Library Screens with Sparse Learning.

Authors:  Péter Kómár; Marko Kalinić
Journal:  ACS Comb Sci       Date:  2020-06-26       Impact factor: 3.784

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  4 in total

Review 1.  Strategies for developing DNA-encoded libraries beyond binding assays.

Authors:  Yiran Huang; Yizhou Li; Xiaoyu Li
Journal:  Nat Chem       Date:  2022-02-04       Impact factor: 24.274

Review 2.  Power in Numbers: Harnessing Combinatorial and Integrated Screens to Advance Nanomedicine.

Authors:  Natalie Boehnke; Paula T Hammond
Journal:  JACS Au       Date:  2021-11-23

3.  Chemical Evolution of Natural Product Structure.

Authors:  Michael Grigalunas; Susanne Brakmann; Herbert Waldmann
Journal:  J Am Chem Soc       Date:  2022-02-21       Impact factor: 15.419

4.  DNA-Encoded Library Hit Confirmation: Bridging the Gap Between On-DNA and Off-DNA Chemistry.

Authors:  Bing Xia; G Joseph Franklin; Xiaojie Lu; Katie L Bedard; LaShadric C Grady; Jennifer D Summerfield; Eric X Shi; Bryan W King; Kenneth E Lind; Cynthia Chiu; Eleanor Watts; Vera Bodmer; Xiaopeng Bai; Lisa A Marcaurelle
Journal:  ACS Med Chem Lett       Date:  2021-06-03       Impact factor: 4.632

  4 in total

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