Literature DB >> 33735228

Blind deconvolution estimation by multi-exponential models and alternated least squares approximations: Free-form and sparse approach.

Daniel U Campos-Delgado1,2, Omar Gutierrez-Navarro3, Ricardo Salinas-Martinez1, Elvis Duran4, Aldo R Mejia-Rodriguez1, Miguel J Velazquez-Duran1, Javier A Jo5.   

Abstract

The deconvolution process is a key step for quantitative evaluation of fluorescence lifetime imaging microscopy (FLIM) samples. By this process, the fluorescence impulse responses (FluoIRs) of the sample are decoupled from the instrument response (InstR). In blind deconvolution estimation (BDE), the FluoIRs and InstR are jointly extracted from a dataset with minimal a priori information. In this work, two BDE algorithms are introduced based on linear combinations of multi-exponential functions to model each FluoIR in the sample. For both schemes, the InstR is assumed with a free-form and a sparse structure. The local perspective of the BDE methodology assumes that the characteristic parameters of the exponential functions (time constants and scaling coefficients) are estimated based on a single spatial point of the dataset. On the other hand, the same exponential functions are used in the whole dataset in the global perspective, and just the scaling coefficients are updated for each spatial point. A least squares formulation is considered for both BDE algorithms. To overcome the nonlinear interaction in the decision variables, an alternating least squares (ALS) methodology iteratively solves both estimation problems based on non-negative and constrained optimizations. The validation stage considered first synthetic datasets at different noise types and levels, and a comparison with the standard deconvolution techniques with a multi-exponential model for FLIM measurements, as well as, with two BDE methodologies in the state of the art: Laguerre basis, and exponentials library. For the experimental evaluation, fluorescent dyes and oral tissue samples were considered. Our results show that local and global perspectives are consistent with the standard deconvolution techniques, and they reached the fastest convergence responses among the BDE algorithms with the best compromise in FluoIRs and InstR estimation errors.

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Year:  2021        PMID: 33735228      PMCID: PMC7971520          DOI: 10.1371/journal.pone.0248301

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.752


  30 in total

1.  Application of the stretched exponential function to fluorescence lifetime imaging.

Authors:  K C Lee; J Siegel; S E Webb; S Lévêque-Fort; M J Cole; R Jones; K Dowling; M J Lever; P M French
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

2.  Fast nonnegative deconvolution for spike train inference from population calcium imaging.

Authors:  Joshua T Vogelstein; Adam M Packer; Timothy A Machado; Tanya Sippy; Baktash Babadi; Rafael Yuste; Liam Paninski
Journal:  J Neurophysiol       Date:  2010-06-16       Impact factor: 2.714

3.  In-vivo fluorescence imaging with a multivariate curve resolution spectral unmixing technique.

Authors:  Heng Xu; Brad W Rice
Journal:  J Biomed Opt       Date:  2009 Nov-Dec       Impact factor: 3.170

4.  Extended output phasor representation of multi-spectral fluorescence lifetime imaging microscopy.

Authors:  Daniel U Campos-Delgado; O Gutiérrez Navarro; E R Arce-Santana; Javier A Jo
Journal:  Biomed Opt Express       Date:  2015-05-13       Impact factor: 3.732

5.  Estimation of the number of fluorescent end-members for quantitative analysis of multispectral FLIM data.

Authors:  Omar Gutierrez-Navarro; Daniel U Campos-Delgado; Edgar R Arce-Santana; Kristen C Maitland; Shuna Cheng; Joey Jabbour; Bilal Malik; Rodrigo Cuenca; Javier A Jo
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

6.  High-speed multispectral fluorescence lifetime imaging implementation for in vivo applications.

Authors:  Sebina Shrestha; Brian E Applegate; Jesung Park; Xudong Xiao; Paritosh Pande; Javier A Jo
Journal:  Opt Lett       Date:  2010-08-01       Impact factor: 3.776

7.  A novel method for fast and robust estimation of fluorescence decay dynamics using constrained least-squares deconvolution with Laguerre expansion.

Authors:  Jing Liu; Yang Sun; Jinyi Qi; Laura Marcu
Journal:  Phys Med Biol       Date:  2012-01-31       Impact factor: 3.609

8.  A fast global fitting algorithm for fluorescence lifetime imaging microscopy based on image segmentation.

Authors:  S Pelet; M J R Previte; L H Laiho; P T C So
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

9.  Combined non-linear laser imaging (two-photon excitation fluorescence microscopy, fluorescence lifetime imaging microscopy, multispectral multiphoton microscopy) in cutaneous tumours: first experiences.

Authors:  V De Giorgi; D Massi; S Sestini; R Cicchi; F S Pavone; T Lotti
Journal:  J Eur Acad Dermatol Venereol       Date:  2009-01-14       Impact factor: 6.166

10.  Rapid global fitting of large fluorescence lifetime imaging microscopy datasets.

Authors:  Sean C Warren; Anca Margineanu; Dominic Alibhai; Douglas J Kelly; Clifford Talbot; Yuriy Alexandrov; Ian Munro; Matilda Katan; Chris Dunsby; Paul M W French
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

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