Literature DB >> 15454472

A fast global fitting algorithm for fluorescence lifetime imaging microscopy based on image segmentation.

S Pelet1, M J R Previte, L H Laiho, P T C So.   

Abstract

Global fitting algorithms have been shown to improve effectively the accuracy and precision of the analysis of fluorescence lifetime imaging microscopy data. Global analysis performs better than unconstrained data fitting when prior information exists, such as the spatial invariance of the lifetimes of individual fluorescent species. The highly coupled nature of global analysis often results in a significantly slower convergence of the data fitting algorithm as compared with unconstrained analysis. Convergence speed can be greatly accelerated by providing appropriate initial guesses. Realizing that the image morphology often correlates with fluorophore distribution, a global fitting algorithm has been developed to assign initial guesses throughout an image based on a segmentation analysis. This algorithm was tested on both simulated data sets and time-domain lifetime measurements. We have successfully measured fluorophore distribution in fibroblasts stained with Hoechst and calcein. This method further allows second harmonic generation from collagen and elastin autofluorescence to be differentiated in fluorescence lifetime imaging microscopy images of ex vivo human skin. On our experimental measurement, this algorithm increased convergence speed by over two orders of magnitude and achieved significantly better fits. Copyright 2004 Biophysical Society

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Year:  2004        PMID: 15454472      PMCID: PMC1304699          DOI: 10.1529/biophysj.104.045492

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Confocal pH imaging of microscopic specimens using fluorescence lifetimes and phase fluorometry: influence of parameter choice on system performance.

Authors:  K Carlsson; A Liljeborg; R M Andersson; H Brismar
Journal:  J Microsc       Date:  2000-08       Impact factor: 1.758

2.  Quantitative imaging of protein-protein interactions by multiphoton fluorescence lifetime imaging microscopy using a streak camera.

Authors:  R V Krishnan; A Masuda; V E Centonze; B Herman
Journal:  J Biomed Opt       Date:  2003-07       Impact factor: 3.170

3.  Fluorescence resonance energy transfer determinations using multiphoton fluorescence lifetime imaging microscopy to characterize amyloid-beta plaques.

Authors:  Brian J Bacskai; Jesse Skoch; Gregory A Hickey; Racquel Allen; Bradley T Hyman
Journal:  J Biomed Opt       Date:  2003-07       Impact factor: 3.170

4.  Two-photon 3-D mapping of ex vivo human skin endogenous fluorescence species based on fluorescence emission spectra.

Authors:  Lily H Laiho; Serge Pelet; Thomas M Hancewicz; Peter D Kaplan; Peter T C So
Journal:  J Biomed Opt       Date:  2005 Mar-Apr       Impact factor: 3.170

5.  Fluorescence lifetime imaging with picosecond resolution for biomedical applications.

Authors:  K Dowling; M J Dayel; M J Lever; P M French; J D Hares; A K Dymoke-Bradshaw
Journal:  Opt Lett       Date:  1998-05-15       Impact factor: 3.776

6.  Differential effects of deuterium oxide on the fluorescence lifetimes and intensities of dyes with different modes of binding to DNA.

Authors:  B L Sailer; A J Nastasi; J G Valdez; J A Steinkamp; H A Crissman
Journal:  J Histochem Cytochem       Date:  1997-02       Impact factor: 2.479

7.  Time-resolved fluorescence spectra of arterial fluorescent compounds: reconstruction with the Laguerre expansion technique.

Authors:  J M Maarek; L Marcu; W J Snyder; W S Grundfest
Journal:  Photochem Photobiol       Date:  2000-02       Impact factor: 3.421

8.  Spectroscopic and microscopic characteristics of human skin autofluorescence emission.

Authors:  H Zeng; C MacAulay; D I McLean; B Palcic
Journal:  Photochem Photobiol       Date:  1995-06       Impact factor: 3.421

9.  High-resolution multiphoton tomography of human skin with subcellular spatial resolution and picosecond time resolution.

Authors:  Karsten Konig; Iris Riemann
Journal:  J Biomed Opt       Date:  2003-07       Impact factor: 3.170

10.  Fluorescence lifetime-resolved pH imaging of living cells.

Authors:  Hai-Jui Lin; Petr Herman; Joseph R Lakowicz
Journal:  Cytometry A       Date:  2003-04       Impact factor: 4.355

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  34 in total

1.  Phasor imaging with a widefield photon-counting detector.

Authors:  Ryan A Colyer; Oswald H W Siegmund; Anton S Tremsin; John V Vallerga; Shimon Weiss; Xavier Michalet
Journal:  J Biomed Opt       Date:  2012-01       Impact factor: 3.170

2.  Methodological considerations for global analysis of cellular FLIM/FRET measurements.

Authors:  Nur Aida Adbul Rahim; Serge Pelet; Roger D Kamm; Peter T C So
Journal:  J Biomed Opt       Date:  2012-02       Impact factor: 3.170

Review 3.  Fluorescence lifetime measurements and biological imaging.

Authors:  Mikhail Y Berezin; Samuel Achilefu
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

4.  Deconvolution of fluorescence lifetime imaging microscopy by a library of exponentials.

Authors:  Daniel U Campos-Delgado; O Gutierrez Navarro; E R Arce-Santana; Alex J Walsh; Melissa C Skala; Javier A Jo
Journal:  Opt Express       Date:  2015-09-07       Impact factor: 3.894

5.  Blind deconvolution estimation of fluorescence measurements through quadratic programming.

Authors:  Daniel U Campos-Delgado; Omar Gutierrez-Navarro; Edgar R Arce-Santana; Melissa C Skala; Alex J Walsh; Javier A Jo
Journal:  J Biomed Opt       Date:  2015-07       Impact factor: 3.170

6.  The phasor approach to fluorescence lifetime imaging analysis.

Authors:  Michelle A Digman; Valeria R Caiolfa; Moreno Zamai; Enrico Gratton
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

7.  Spectrally resolved fluorescence correlation spectroscopy based on global analysis.

Authors:  Michael J R Previte; Serge Pelet; Ki Hean Kim; Christoph Buehler; Peter T C So
Journal:  Anal Chem       Date:  2008-03-20       Impact factor: 6.986

8.  Ultrafast Method for the Analysis of Fluorescence Lifetime Imaging Microscopy Data Based on the Laguerre Expansion Technique.

Authors:  Javier A Jo; Qiyin Fang; Laura Marcu
Journal:  IEEE J Quantum Electron       Date:  2005       Impact factor: 2.318

9.  Quantitative analysis of fluorescence lifetime imaging made easy.

Authors:  Fred S Wouters; Alessandro Esposito
Journal:  HFSP J       Date:  2008-01-18

10.  Quantitative FRET analysis by fast acquisition time domain FLIM at high spatial resolution in living cells.

Authors:  Sergi Padilla-Parra; Nicolas Audugé; Maïté Coppey-Moisan; Marc Tramier
Journal:  Biophys J       Date:  2008-06-06       Impact factor: 4.033

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