Literature DB >> 24921344

Estimation of the number of fluorescent end-members for quantitative analysis of multispectral FLIM data.

Omar Gutierrez-Navarro, Daniel U Campos-Delgado, Edgar R Arce-Santana, Kristen C Maitland, Shuna Cheng, Joey Jabbour, Bilal Malik, Rodrigo Cuenca, Javier A Jo.   

Abstract

Multispectral fluorescence lifetime imaging (m-FLIM) can potentially allow identifying the endogenous fluorophores present in biological tissue. Quantitative description of such data requires estimating the number of components in the sample, their characteristic fluorescent decays, and their relative contributions or abundances. Unfortunately, this inverse problem usually requires prior knowledge about the data, which is seldom available in biomedical applications. This work presents a new methodology to estimate the number of potential endogenous fluorophores present in biological tissue samples from time-domain m-FLIM data. Furthermore, a completely blind linear unmixing algorithm is proposed. The method was validated using both synthetic and experimental m-FLIM data. The experimental m-FLIM data include in-vivo measurements from healthy and cancerous hamster cheek-pouch epithelial tissue, and ex-vivo measurements from human coronary atherosclerotic plaques. The analysis of m-FLIM data from in-vivo hamster oral mucosa identified healthy from precancerous lesions, based on the relative concentration of their characteristic fluorophores. The algorithm also provided a better description of atherosclerotic plaques in term of their endogenous fluorophores. These results demonstrate the potential of this methodology to provide quantitative description of tissue biochemical composition.

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Year:  2014        PMID: 24921344      PMCID: PMC4086288          DOI: 10.1364/OE.22.012255

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  14 in total

1.  Automated analysis of fluorescence lifetime imaging microscopy (FLIM) data based on the Laguerre deconvolution method.

Authors:  Paritosh Pande; Javier A Jo
Journal:  IEEE Trans Biomed Eng       Date:  2010-10-07       Impact factor: 4.538

Review 2.  Spectral imaging and linear unmixing in light microscopy.

Authors:  Timo Zimmermann
Journal:  Adv Biochem Eng Biotechnol       Date:  2005       Impact factor: 2.635

3.  Quantitative lifetime unmixing of multiexponentially decaying fluorophores using single-frequency fluorescence lifetime imaging microscopy.

Authors:  Gert-Jan Kremers; Erik B van Munster; Joachim Goedhart; Theodorus W J Gadella
Journal:  Biophys J       Date:  2008-03-21       Impact factor: 4.033

4.  Fluorescence lifetime imaging distinguishes basal cell carcinoma from surrounding uninvolved skin.

Authors:  N P Galletly; J McGinty; C Dunsby; F Teixeira; J Requejo-Isidro; I Munro; D S Elson; M A A Neil; A C Chu; P M W French; G W Stamp
Journal:  Br J Dermatol       Date:  2008-07-01       Impact factor: 9.302

5.  A fully constrained optimization method for time-resolved multispectral fluorescence lifetime imaging microscopy data unmixing.

Authors:  Omar Gutierrez-Navarro; Daniel U Campos-Delgado; Edgar Arce-Santana; Martin O Mendez; Javier A Jo
Journal:  IEEE Trans Biomed Eng       Date:  2013-01-21       Impact factor: 4.538

6.  Fluorescence lifetime imaging and reflectance confocal microscopy for multiscale imaging of oral precancer.

Authors:  Joey M Jabbour; Shuna Cheng; Bilal H Malik; Rodrigo Cuenca; Javier A Jo; John Wright; Yi-Shing Lisa Cheng; Kristen C Maitland
Journal:  J Biomed Opt       Date:  2013-04       Impact factor: 3.170

7.  Blind end-member and abundance extraction for multispectral fluorescence lifetime imaging microscopy data.

Authors:  Omar Gutierrez-Navarro; Daniel U Campos-Delgado; Edgar R Arce-Santana; Martin O Mendez; Javier A Jo
Journal:  IEEE J Biomed Health Inform       Date:  2014-03       Impact factor: 5.772

Review 8.  Fluorescence lifetime in cardiovascular diagnostics.

Authors:  Laura Marcu
Journal:  J Biomed Opt       Date:  2010 Jan-Feb       Impact factor: 3.170

9.  Biochemical characterization of atherosclerotic plaques by endogenous multispectral fluorescence lifetime imaging microscopy.

Authors:  Jesung Park; Paritosh Pande; Sebina Shrestha; Fred Clubb; Brian E Applegate; Javier A Jo
Journal:  Atherosclerosis       Date:  2011-11-15       Impact factor: 5.162

10.  In vivo simultaneous morphological and biochemical optical imaging of oral epithelial cancer.

Authors:  Javier A Jo; Brian E Applegate; Jesung Park; Sebina Shrestha; Paritosh Pande; Irma B Gimenez-Conti; Jimi L Brandon
Journal:  IEEE Trans Biomed Eng       Date:  2010-07-23       Impact factor: 4.538

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  6 in total

1.  Deconvolution of fluorescence lifetime imaging microscopy by a library of exponentials.

Authors:  Daniel U Campos-Delgado; O Gutierrez Navarro; E R Arce-Santana; Alex J Walsh; Melissa C Skala; Javier A Jo
Journal:  Opt Express       Date:  2015-09-07       Impact factor: 3.894

2.  Blind deconvolution estimation of fluorescence measurements through quadratic programming.

Authors:  Daniel U Campos-Delgado; Omar Gutierrez-Navarro; Edgar R Arce-Santana; Melissa C Skala; Alex J Walsh; Javier A Jo
Journal:  J Biomed Opt       Date:  2015-07       Impact factor: 3.170

3.  Extended output phasor representation of multi-spectral fluorescence lifetime imaging microscopy.

Authors:  Daniel U Campos-Delgado; O Gutiérrez Navarro; E R Arce-Santana; Javier A Jo
Journal:  Biomed Opt Express       Date:  2015-05-13       Impact factor: 3.732

4.  Extended Blind End-member and Abundance Extraction for Biomedical Imaging Applications.

Authors:  D U Campos-Delgado; O Gutierrez-Navarro; J J Rico-Jimenez; E Duran; H Fabelo; S Ortega; G M Callicó; J A Jo
Journal:  IEEE Access       Date:  2019-12-12       Impact factor: 3.367

5.  Quadratic blind linear unmixing: A graphical user interface for tissue characterization.

Authors:  O Gutierrez-Navarro; D U Campos-Delgado; E R Arce-Santana; Javier A Jo
Journal:  Comput Methods Programs Biomed       Date:  2015-11-10       Impact factor: 5.428

6.  Blind deconvolution estimation by multi-exponential models and alternated least squares approximations: Free-form and sparse approach.

Authors:  Daniel U Campos-Delgado; Omar Gutierrez-Navarro; Ricardo Salinas-Martinez; Elvis Duran; Aldo R Mejia-Rodriguez; Miguel J Velazquez-Duran; Javier A Jo
Journal:  PLoS One       Date:  2021-03-18       Impact factor: 3.752

  6 in total

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