Literature DB >> 33597515

Reentrant liquid condensate phase of proteins is stabilized by hydrophobic and non-ionic interactions.

Georg Krainer1, Timothy J Welsh1, Jerelle A Joseph2,3,4, Jorge R Espinosa2,3,4, Sina Wittmann5,6, Ella de Csilléry1, Akshay Sridhar2,3,4, Zenon Toprakcioglu1, Giedre Gudiškytė1, Magdalena A Czekalska1,7, William E Arter1, Jordina Guillén-Boixet6, Titus M Franzmann6, Seema Qamar8, Peter St George-Hyslop9,10, Anthony A Hyman11, Rosana Collepardo-Guevara12,13,14, Simon Alberti15, Tuomas P J Knowles16,17.   

Abstract

Liquid-liquid phase separation of proteins underpins the formation of membraneless compartments in living cells. Elucidating the molecular driving forces underlying protein phase transitions is therefore a key objective for understanding biological function and malfunction. Here we show that cellular proteins, which form condensates at low salt concentrations, including FUS, TDP-43, Brd4, Sox2, and Annexin A11, can reenter a phase-separated regime at high salt concentrations. By bringing together experiments and simulations, we demonstrate that this reentrant phase transition in the high-salt regime is driven by hydrophobic and non-ionic interactions, and is mechanistically distinct from the low-salt regime, where condensates are additionally stabilized by electrostatic forces. Our work thus sheds light on the cooperation of hydrophobic and non-ionic interactions as general driving forces in the condensation process, with important implications for aberrant function, druggability, and material properties of biomolecular condensates.

Entities:  

Year:  2021        PMID: 33597515     DOI: 10.1038/s41467-021-21181-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  84 in total

Review 1.  Liquid-Liquid Phase Separation in Disease.

Authors:  Simon Alberti; Dorothee Dormann
Journal:  Annu Rev Genet       Date:  2019-08-20       Impact factor: 16.830

Review 2.  Cellular sensing by phase separation: Using the process, not just the products.

Authors:  Haneul Yoo; Catherine Triandafillou; D Allan Drummond
Journal:  J Biol Chem       Date:  2019-03-15       Impact factor: 5.157

3.  Mechanobiology of Protein Droplets: Force Arises from Disorder.

Authors:  Timothy J Welsh; Yi Shen; Aviad Levin; Tuomas P J Knowles
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

Review 4.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

Review 5.  Liquid phase condensation in cell physiology and disease.

Authors:  Yongdae Shin; Clifford P Brangwynne
Journal:  Science       Date:  2017-09-22       Impact factor: 47.728

6.  Physical principles of intracellular organization via active and passive phase transitions.

Authors:  Joel Berry; Clifford P Brangwynne; Mikko Haataja
Journal:  Rep Prog Phys       Date:  2018-01-09

7.  Phase separation provides a mechanism to reduce noise in cells.

Authors:  A Klosin; F Oltsch; T Harmon; A Honigmann; F Jülicher; A A Hyman; C Zechner
Journal:  Science       Date:  2020-01-24       Impact factor: 47.728

8.  Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.

Authors:  Amandine Molliex; Jamshid Temirov; Jihun Lee; Maura Coughlin; Anderson P Kanagaraj; Hong Joo Kim; Tanja Mittag; J Paul Taylor
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

Review 9.  Biomolecular condensates: organizers of cellular biochemistry.

Authors:  Salman F Banani; Hyun O Lee; Anthony A Hyman; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-22       Impact factor: 94.444

10.  Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments.

Authors:  Jill J Bouchard; Joel H Otero; Daniel C Scott; Elzbieta Szulc; Erik W Martin; Nafiseh Sabri; Daniele Granata; Melissa R Marzahn; Kresten Lindorff-Larsen; Xavier Salvatella; Brenda A Schulman; Tanja Mittag
Journal:  Mol Cell       Date:  2018-09-20       Impact factor: 19.328

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  47 in total

1.  Accurate model of liquid-liquid phase behavior of intrinsically disordered proteins from optimization of single-chain properties.

Authors:  Giulio Tesei; Thea K Schulze; Ramon Crehuet; Kresten Lindorff-Larsen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-02       Impact factor: 11.205

2.  'RNA modulation of transport properties and stability in phase-separated condensates.

Authors:  Andrés R Tejedor; Adiran Garaizar; Jorge Ramírez; Jorge R Espinosa
Journal:  Biophys J       Date:  2021-11-09       Impact factor: 4.033

3.  Assembly of model postsynaptic densities involves interactions auxiliary to stoichiometric binding.

Authors:  Yi-Hsuan Lin; Haowei Wu; Bowen Jia; Mingjie Zhang; Hue Sun Chan
Journal:  Biophys J       Date:  2021-10-09       Impact factor: 4.033

4.  Probing Liquid-Liquid Phase Separation of RNA-Binding Proteins In Vitro and In Vivo.

Authors:  Stephanie Heinrich; Maria Hondele
Journal:  Methods Mol Biol       Date:  2022

5.  Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy.

Authors:  Jerelle A Joseph; Aleks Reinhardt; Anne Aguirre; Pin Yu Chew; Kieran O Russell; Jorge R Espinosa; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Comput Sci       Date:  2021-11-22

6.  ATP biphasically modulates LLPS of TDP-43 PLD by specifically binding arginine residues.

Authors:  Mei Dang; Liangzhong Lim; Jian Kang; Jianxing Song
Journal:  Commun Biol       Date:  2021-06-10

7.  Solubility Parameters of Amino Acids on Liquid-Liquid Phase Separation and Aggregation of Proteins.

Authors:  Akira Nomoto; Suguru Nishinami; Kentaro Shiraki
Journal:  Front Cell Dev Biol       Date:  2021-06-16

8.  Deciphering the Role of π-Interactions in Polyelectrolyte Complexes Using Rationally Designed Peptides.

Authors:  Sara Tabandeh; Cristina Elisabeth Lemus; Lorraine Leon
Journal:  Polymers (Basel)       Date:  2021-06-24       Impact factor: 4.329

9.  A multi-step nucleation process determines the kinetics of prion-like domain phase separation.

Authors:  Erik W Martin; Tyler S Harmon; Jesse B Hopkins; Srinivas Chakravarthy; J Jeremías Incicco; Peter Schuck; Andrea Soranno; Tanja Mittag
Journal:  Nat Commun       Date:  2021-07-23       Impact factor: 14.919

Review 10.  New Family Members of FG Repeat Proteins and Their Unexplored Roles During Phase Separation.

Authors:  Yoichi Shinkai; Masahiro Kuramochi; Takamitsu Miyafusa
Journal:  Front Cell Dev Biol       Date:  2021-07-12
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