Literature DB >> 30877200

Cellular sensing by phase separation: Using the process, not just the products.

Haneul Yoo1, Catherine Triandafillou2, D Allan Drummond3,4.   

Abstract

Phase separation creates two distinct liquid phases from a single mixed liquid phase, like oil droplets separating from water. Considerable attention has focused on how the products of phase separation-the resulting condensates-might act as biological compartments, bioreactors, filters, and membraneless organelles in cells. Here, we expand this perspective, reviewing recent results showing how cells instead use the process of phase separation to sense intracellular and extracellular changes. We review case studies in phase separation-based sensing and discuss key features, such as extraordinary sensitivity, which make the process of phase separation ideally suited to meet a range of sensory challenges cells encounter.
© 2019 Yoo et al.

Entities:  

Keywords:  Sup35; biophysics; biosensor; cell biology; cellular regulation; cyclic GMP-AMP synthase; phase separation; phase transition; poly(A)-binding protein; stress response

Mesh:

Year:  2019        PMID: 30877200      PMCID: PMC6509497          DOI: 10.1074/jbc.TM118.001191

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  84 in total

1.  Mammalian peripheral circadian oscillators are temperature compensated.

Authors:  Bryan A Reyes; Julie S Pendergast; Shin Yamazaki
Journal:  J Biol Rhythms       Date:  2008-02       Impact factor: 3.182

2.  α-Proteobacterial RNA Degradosomes Assemble Liquid-Liquid Phase-Separated RNP Bodies.

Authors:  Nadra Al-Husini; Dylan T Tomares; Obaidah Bitar; W Seth Childers; Jared M Schrader
Journal:  Mol Cell       Date:  2018-09-06       Impact factor: 17.970

3.  Temperature-dependent sex determination in reptiles: proximate mechanisms, ultimate outcomes, and practical applications.

Authors:  D Crews; J M Bergeron; J J Bull; D Flores; A Tousignant; J K Skipper; T Wibbels
Journal:  Dev Genet       Date:  1994

4.  The Eukaryotic CO2-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization.

Authors:  Elizabeth S Freeman Rosenzweig; Bin Xu; Luis Kuhn Cuellar; Antonio Martinez-Sanchez; Miroslava Schaffer; Mike Strauss; Heather N Cartwright; Pierre Ronceray; Jürgen M Plitzko; Friedrich Förster; Ned S Wingreen; Benjamin D Engel; Luke C M Mackinder; Martin C Jonikas
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

5.  Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2(alpha) phosphorylation at Thr169.

Authors:  Susanne Kramer; Rafael Queiroz; Louise Ellis; Helena Webb; Jörg D Hoheisel; Christine Clayton; Mark Carrington
Journal:  J Cell Sci       Date:  2008-08-19       Impact factor: 5.285

6.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

7.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

8.  Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles.

Authors:  Timothy J Nott; Evangelia Petsalaki; Patrick Farber; Dylan Jervis; Eden Fussner; Anne Plochowietz; Timothy D Craggs; David P Bazett-Jones; Tony Pawson; Julie D Forman-Kay; Andrew J Baldwin
Journal:  Mol Cell       Date:  2015-03-05       Impact factor: 17.970

9.  Promiscuous interactions and protein disaggregases determine the material state of stress-inducible RNP granules.

Authors:  Sonja Kroschwald; Shovamayee Maharana; Daniel Mateju; Liliana Malinovska; Elisabeth Nüske; Ina Poser; Doris Richter; Simon Alberti
Journal:  Elife       Date:  2015-08-04       Impact factor: 8.140

10.  Large-scale filament formation inhibits the activity of CTP synthetase.

Authors:  Rachael M Barry; Anne-Florence Bitbol; Alexander Lorestani; Emeric J Charles; Chris H Habrian; Jesse M Hansen; Hsin-Jung Li; Enoch P Baldwin; Ned S Wingreen; Justin M Kollman; Zemer Gitai
Journal:  Elife       Date:  2014-07-16       Impact factor: 8.140

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  50 in total

Review 1.  Phase separation of RNA-binding proteins in physiology and disease: An introduction to the JBC Reviews thematic series.

Authors:  James Shorter
Journal:  J Biol Chem       Date:  2019-04-04       Impact factor: 5.157

Review 2.  Emerging Roles for Phase Separation in Plants.

Authors:  Ryan J Emenecker; Alex S Holehouse; Lucia C Strader
Journal:  Dev Cell       Date:  2020-10-12       Impact factor: 12.270

3.  Liquid network connectivity regulates the stability and composition of biomolecular condensates with many components.

Authors:  Jorge R Espinosa; Jerelle A Joseph; Ignacio Sanchez-Burgos; Adiran Garaizar; Daan Frenkel; Rosana Collepardo-Guevara
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-01       Impact factor: 11.205

4.  Temperature-dependent reentrant phase transition of RNA-polycation mixtures.

Authors:  Paul Pullara; Ibraheem Alshareedah; Priya R Banerjee
Journal:  Soft Matter       Date:  2022-02-16       Impact factor: 3.679

Review 5.  Polyvalent design in the cGAS-STING pathway.

Authors:  Zachary T Bennett; Suxin Li; Baran D Sumer; Jinming Gao
Journal:  Semin Immunol       Date:  2021-12-15       Impact factor: 11.130

Review 6.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

Review 7.  Phase separation of DNA: From past to present.

Authors:  John T King; Anisha Shakya
Journal:  Biophys J       Date:  2021-02-12       Impact factor: 4.033

Review 8.  The role of liquid-liquid phase separation in regulating enzyme activity.

Authors:  Brian G O'Flynn; Tanja Mittag
Journal:  Curr Opin Cell Biol       Date:  2021-01-24       Impact factor: 8.382

9.  Computational resources for identifying and describing proteins driving liquid-liquid phase separation.

Authors:  Rita Pancsa; Wim Vranken; Bálint Mészáros
Journal:  Brief Bioinform       Date:  2021-09-02       Impact factor: 11.622

Review 10.  Biomolecular Condensates and Cancer.

Authors:  Ann Boija; Isaac A Klein; Richard A Young
Journal:  Cancer Cell       Date:  2021-01-07       Impact factor: 31.743

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