Literature DB >> 33514117

Viscoelasticity of biomolecular condensates conforms to the Jeffreys model.

Huan-Xiang Zhou1.   

Abstract

Biomolecular condensates, largely by virtue of their material properties, are revolutionizing biology, and yet, the physical understanding of these properties is lagging. Here, I show that the viscoelasticity of condensates can be captured by a simple model, comprising a component where shear relaxation is an exponential function (with time constant τ1) and a component with nearly instantaneous shear relaxation (time constant τ0 → 0). Modulation of intermolecular interactions, e.g., by adding salt, can disparately affect the two components such that the τ1 component may dominate at low salt, whereas the τ0 component may dominate at high salt. Condensates have a tendency to fuse, with the dynamics accelerated by interfacial tension and impeded by viscosity. For fast-fusion condensates, shear relaxation on the τ1 timescale may become rate-limiting such that the fusion speed is no longer in direction proportion to the interfacial tension. These insights help narrow the gap in understanding between the biology and physics of biomolecular condensates.

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Year:  2021        PMID: 33514117      PMCID: PMC7847312          DOI: 10.1063/5.0038916

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

1.  Tug of War between Condensate Phases in a Minimal Macromolecular System.

Authors:  Archishman Ghosh; Xiaojia Zhang; Huan-Xiang Zhou
Journal:  J Am Chem Soc       Date:  2020-05-04       Impact factor: 15.419

2.  Translation repressors, an RNA helicase, and developmental cues control RNP phase transitions during early development.

Authors:  Arnaud Hubstenberger; Scott L Noble; Cristiana Cameron; Thomas C Evans
Journal:  Dev Cell       Date:  2013-10-28       Impact factor: 12.270

3.  Erratum: Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps [Phys. Rev. Lett. 121, 258101 (2018)].

Authors:  Louise M Jawerth; Mahdiye Ijavi; Martine Ruer; Shambaditya Saha; Marcus Jahnel; Anthony A Hyman; Frank Jülicher; Elisabeth Fischer-Friedrich
Journal:  Phys Rev Lett       Date:  2020-11-27       Impact factor: 9.161

4.  Determinants for Fusion Speed of Biomolecular Droplets.

Authors:  Archishman Ghosh; Huan-Xiang Zhou
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-08       Impact factor: 15.336

5.  Protein Network Structure Enables Switching between Liquid and Gel States.

Authors:  Jeremy D Schmit; Jill J Bouchard; Erik W Martin; Tanja Mittag
Journal:  J Am Chem Soc       Date:  2020-01-03       Impact factor: 15.419

6.  Three archetypical classes of macromolecular regulators of protein liquid-liquid phase separation.

Authors:  Archishman Ghosh; Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

7.  Interplay between Short-Range Attraction and Long-Range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes.

Authors:  Ibraheem Alshareedah; Taranpreet Kaur; Jason Ngo; Hannah Seppala; Liz-Audrey Djomnang Kounatse; Wei Wang; Mahdi Muhammad Moosa; Priya R Banerjee
Journal:  J Am Chem Soc       Date:  2019-09-05       Impact factor: 15.419

8.  Salt-Dependent Rheology and Surface Tension of Protein Condensates Using Optical Traps.

Authors:  Louise M Jawerth; Mahdiye Ijavi; Martine Ruer; Shambaditya Saha; Marcus Jahnel; Anthony A Hyman; Frank Jülicher; Elisabeth Fischer-Friedrich
Journal:  Phys Rev Lett       Date:  2018-12-21       Impact factor: 9.161

9.  Determination of Condensate Material Properties from Droplet Deformation.

Authors:  Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2020-09-16       Impact factor: 2.991

Review 10.  Why Do Disordered and Structured Proteins Behave Differently in Phase Separation?

Authors:  Huan-Xiang Zhou; Valery Nguemaha; Konstantinos Mazarakos; Sanbo Qin
Journal:  Trends Biochem Sci       Date:  2018-04-30       Impact factor: 13.807

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  5 in total

1.  Determining Thermodynamic and Material Properties of Biomolecular Condensates by Confocal Microscopy and Optical Tweezers.

Authors:  Archishman Ghosh; Divya Kota; Huan-Xiang Zhou
Journal:  Methods Mol Biol       Date:  2023

2.  Multiscale Modeling of Protein-RNA Condensation in and Out of Equilibrium.

Authors:  Rabia Laghmach; Isha Malhotra; Davit A Potoyan
Journal:  Methods Mol Biol       Date:  2023

Review 3.  A conceptual framework for understanding phase separation and addressing open questions and challenges.

Authors:  Tanja Mittag; Rohit V Pappu
Journal:  Mol Cell       Date:  2022-06-07       Impact factor: 19.328

4.  Shape recovery of deformed biomolecular droplets: Dependence on condensate viscoelasticity.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2021-10-14       Impact factor: 4.304

Review 5.  What are the distinguishing features and size requirements of biomolecular condensates and their implications for RNA-containing condensates?

Authors:  Julie D Forman-Kay; Jonathon A Ditlev; Michael L Nosella; Hyun O Lee
Journal:  RNA       Date:  2021-11-12       Impact factor: 4.942

  5 in total

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