Literature DB >> 32857503

Determination of Condensate Material Properties from Droplet Deformation.

Huan-Xiang Zhou1.   

Abstract

I derive theoretical results that relate the effective spring constant, χ, of protein droplets to their material properties. χ, defined as the ratio between a uniaxial applied force and the extent of the corresponding deformation, can be measured by optical tweezers. When the deformation is static, where the applied force is balanced by the interfacial tension of the droplet, the spring constant allows for the determination of the surface tension (γ). When a sinusoidal force is applied (at frequency ω), the dynamic spring constant χ(ω) is related to both γ and the complex shear modulus, G*(ω), of the droplet. The results derived here enable accurate extraction of γ and G*(ω) from χ(ω) data.

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Year:  2020        PMID: 32857503      PMCID: PMC7530117          DOI: 10.1021/acs.jpcb.0c06230

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  18 in total

1.  Tug of War between Condensate Phases in a Minimal Macromolecular System.

Authors:  Archishman Ghosh; Xiaojia Zhang; Huan-Xiang Zhou
Journal:  J Am Chem Soc       Date:  2020-05-04       Impact factor: 15.419

Review 2.  Organization and Function of Non-dynamic Biomolecular Condensates.

Authors:  Jeffrey B Woodruff; Anthony A Hyman; Elvan Boke
Journal:  Trends Biochem Sci       Date:  2017-12-16       Impact factor: 13.807

3.  Three archetypical classes of macromolecular regulators of protein liquid-liquid phase separation.

Authors:  Archishman Ghosh; Konstantinos Mazarakos; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

4.  Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints.

Authors:  D Shoup; G Lipari; A Szabo
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

5.  Interplay between Short-Range Attraction and Long-Range Repulsion Controls Reentrant Liquid Condensation of Ribonucleoprotein-RNA Complexes.

Authors:  Ibraheem Alshareedah; Taranpreet Kaur; Jason Ngo; Hannah Seppala; Liz-Audrey Djomnang Kounatse; Wei Wang; Mahdi Muhammad Moosa; Priya R Banerjee
Journal:  J Am Chem Soc       Date:  2019-09-05       Impact factor: 15.419

6.  Surface Fluctuations and Coalescence of Nucleolar Droplets in the Human Cell Nucleus.

Authors:  Christina M Caragine; Shannon C Haley; Alexandra Zidovska
Journal:  Phys Rev Lett       Date:  2018-10-05       Impact factor: 9.161

Review 7.  Why Do Disordered and Structured Proteins Behave Differently in Phase Separation?

Authors:  Huan-Xiang Zhou; Valery Nguemaha; Konstantinos Mazarakos; Sanbo Qin
Journal:  Trends Biochem Sci       Date:  2018-04-30       Impact factor: 13.807

8.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

9.  LASSI: A lattice model for simulating phase transitions of multivalent proteins.

Authors:  Jeong-Mo Choi; Furqan Dar; Rohit V Pappu
Journal:  PLoS Comput Biol       Date:  2019-10-21       Impact factor: 4.475

10.  Liquid-Liquid Phase Separation of Patchy Particles Illuminates Diverse Effects of Regulatory Components on Protein Droplet Formation.

Authors:  Valery Nguemaha; Huan-Xiang Zhou
Journal:  Sci Rep       Date:  2018-04-30       Impact factor: 4.379

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  4 in total

1.  Viscoelasticity of biomolecular condensates conforms to the Jeffreys model.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2021-01-28       Impact factor: 3.488

2.  Determining Thermodynamic and Material Properties of Biomolecular Condensates by Confocal Microscopy and Optical Tweezers.

Authors:  Archishman Ghosh; Divya Kota; Huan-Xiang Zhou
Journal:  Methods Mol Biol       Date:  2023

3.  Shape recovery of deformed biomolecular droplets: Dependence on condensate viscoelasticity.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2021-10-14       Impact factor: 4.304

4.  Surface tension and super-stoichiometric surface enrichment in two-component biomolecular condensates.

Authors:  Andrew G T Pyo; Yaojun Zhang; Ned S Wingreen
Journal:  iScience       Date:  2022-02-01
  4 in total

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