| Literature DB >> 33299540 |
Christos Fragopoulos1, Abraham Pouliakis2, Christos Meristoudis3, Emmanouil Mastorakis4, Niki Margari2, Nicolaos Chroniaris5, Nektarios Koufopoulos2, Alexander G Delides6, Nicolaos Machairas7, Vasileia Ntomi7, Konstantinos Nastos7, Ioannis G Panayiotides2, Emmanouil Pikoulis7, Evangelos P Misiakos7.
Abstract
OBJECTIVE: This study investigates the potential of an artificial intelligence (AI) methodology, the radial basis function (RBF) artificial neural network (ANN), in the evaluation of thyroid lesions. Study Design. The study was performed on 447 patients who had both cytological and histological evaluation in agreement. Cytological specimens were prepared using liquid-based cytology, and the histological result was based on subsequent surgical samples. Each specimen was digitized; on these images, nuclear morphology features were measured by the use of an image analysis system. The extracted measurements (41,324 nuclei) were separated into two sets: the training set that was used to create the RBF ANN and the test set that was used to evaluate the RBF performance. The system aimed to predict the histological status as benign or malignant.Entities:
Year: 2020 PMID: 33299540 PMCID: PMC7707952 DOI: 10.1155/2020/5464787
Source DB: PubMed Journal: J Thyroid Res
Cases used in the study grouped as benign or malignant according to the histological diagnosis (rows). In the columns, the cytological results are indicated.
| Histology | Colloid | Follicular cells | Follicular neoplasm | Histiocytes | Lymphocytes | Oxyphilic cells | Anaplastic Ca | Follicular Ca | Medullary Ca | Papillary Ca | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Benign | 26 | 236 | 4 | 6 | 7 | 9 | 288 | ||||
| Adenomatous nodule | 2 | 22 | 24 | ||||||||
| Follicular adenoma | 1 | 4 | 5 | ||||||||
| Goiter | 20 | 159 | 3 | 4 | 186 | ||||||
| Hashimoto thyroiditis | 13 | 7 | 4 | 24 | |||||||
| Nodular hyperplasia | 3 | 3 | |||||||||
| Nodular hyperplasia-hyperplastic nodule | 37 | 37 | |||||||||
| Oxyphilic adenoma | 2 | 1 | 1 | 4 | |||||||
| Thyroiditis-nonspecific | 1 | 2 | 2 | 5 | |||||||
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| Malignant | 3 | 5 | 2 | 3 | 10 | 20 | 116 | 159 | |||
| Anaplastic Ca | 3 | 3 | |||||||||
| Follicular Ca | 10 | 10 | |||||||||
| Medullary Ca | 20 | 20 | |||||||||
| Papillary Ca | 3 | 5 | 2 | 116 | 126 | ||||||
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| |||||||||||
| Total | 26 | 239 | 4 | 11 | 9 | 9 | 3 | 10 | 20 | 116 | 447 |
Ca, carcinoma.
Figure 1Flow chart of the system architecture.
Image analysis measurements categorized into geometrical and densitometric.
| Geometric characteristics | Densitometric characteristics |
|---|---|
| Nucleus area | Integrated optical density |
| Nucleus major axis | Mean value of nucleus red color |
| Nucleus minor axis | Mean value of nucleus green color |
| Aspect ratio | Mean value of nucleus blue color |
| Maximum calliper | Mean value of optical density |
| Minimum calliper | Maximum value of optical density |
| Average value of calliper | Minimum value of optical density |
| Maximum nucleus radius | Standard deviation of optical density |
| Minimum nucleus radius | Margination |
| Radius ratio | Heterogeneity |
| Nucleus perimeter | |
| Nucleus roundness | |
| Fractal dimension |
Figure 2Typical images from the cytological material with highlighted selected nuclei. (a) Image of nodular hyperplasia (benign); (b) image of papillary carcinoma. Both images were captured using a 40x microscope objective lens.
Cell nuclei and colloid structures measured from the cytological slides in relation to the histological result.
| Histology | Colloid | Follicular neoplasm | Histiocytes | Lymphocytes | Oxyphilic cells | Stromal cells | Follicular cells | Medullary Ca | Anaplastic Ca | Papillary Ca | Follicular Ca | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Benign | 250 | 388 | 1134 | 217 | 2291 | 2 | 22308 | 3 | 3 | 26596 | ||
| Adenomatous nodule | 2 | 147 | 8 | 2057 | 2214 | |||||||
| Follicular adenoma | 4 | 388 | 3 | 395 | ||||||||
| Goiter | 209 | 863 | 820 | 2 | 15370 | 3 | 17270 | |||||
| Hashimoto | 3 | 167 | 1044 | 963 | 2177 | |||||||
| Nodular hyperplasia | 1 | 6 | 9 | 206 | 222 | |||||||
| Oxyphilic adenoma | 29 | 24 | 12 | 276 | 341 | |||||||
| Thyroiditis-nonspecific | 2 | 91 | 27 | 142 | 174 | 3 | 439 | |||||
| Nodular hyperplasia-hyperplastic nodule | 3538 | 3538 | ||||||||||
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| Malignant | 4 | 114 | 12 | 283 | 1745 | 185 | 11454 | 931 | 14728 | |||
| Anaplastic Ca | 185 | 185 | ||||||||||
| Follicular Ca | 931 | 931 | ||||||||||
| Medullary Ca | 1745 | 1745 | ||||||||||
| Papillary Ca | 4 | 114 | 12 | 283 | 11454 | 11867 | ||||||
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| ||||||||||||
| Total | 254 | 388 | 1248 | 229 | 2291 | 2 | 22591 | 1748 | 185 | 11457 | 931 | 41324 |
Cross tabulation of classification results for benign and malignant cell nuclei and colloid structures by the RBF ANN for the training and test sets.
| Benign | Malignant | Total | |
|---|---|---|---|
| Training set | 13808 | 6806 | 20614 |
| Benign | 12517 | 716 | 13233 |
| Malignant | 1291 | 6090 | 7381 |
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| |||
| Test set | 13397 | 7313 | 20710 |
| Benign | 12028 | 1335 | 13363 |
| Malignant | 1369 | 5978 | 7347 |
|
| |||
| Total | 27205 | 14119 | 41324 |
Performance indices for the RBF ANN for the training and test sets and for both sets combined.
| Training set | Test set | Both sets | |
|---|---|---|---|
| Sensitivity (%) | 82.51 | 81.37 | 81.94 |
| Specificity (%) | 94.59 | 90.01 | 92.29 |
| PPV (%) | 89.48 | 81.74 | 85.47 |
| NPV (%) | 90.65 | 89.78 | 90.22 |
| FPR (%) | 5.41 | 9.99 | 7.71 |
| FNR (%) | 17.49 | 18.63 | 18.06 |
| OA (%) | 90.26 | 86.94 | 88.60 |
| PLR | 15.25 | 8.14 | 10.63 |
| NLR | 0.18 | 0.21 | 0.20 |
| Odds ratio | 82.47 | 39.34 | 54.29 |
Cross-tabulation of the patient classification subsystem for the numeric and percentages classifiers separately for the training and test sets.
| Histology | Numeric classifier | Percentages classifier | Total | ||
|---|---|---|---|---|---|
| Benign | Malignant | Benign | Malignant | ||
| Training set | |||||
| Benign | 137 | 8 | 139 | 6 | 145 |
| Malignant | 6 | 73 | 4 | 75 | 79 |
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| |||||
| Test set | |||||
| Benign | 134 | 9 | 136 | 7 | 143 |
| Malignant | 7 | 73 | 4 | 76 | 80 |
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| |||||
| Total | 284 | 163 | 283 | 164 | 447 |
Performance indices for the patient classification subsystems (numeric and percentages classifiers) for the training and test sets and for both sets combined.
| Numeric classifier | Percentages classifier | |||||
|---|---|---|---|---|---|---|
| Training set | Test set | Both sets | Training set | Test set | Both sets | |
| Sensitivity (%) | 92.41 | 91.25 | 91.82 | 94.94 | 95.00 | 94.97 |
| Specificity (%) | 94.48 | 93.71 | 94.10 | 95.86 | 95.10 | 95.49 |
| PPV (%) | 90.12 | 89.02 | 89.57 | 92.59 | 91.57 | 92.07 |
| NPV (%) | 95.80 | 95.04 | 95.42 | 97.20 | 97.14 | 97.17 |
| FPR (%) | 5.52 | 6.29 | 5.90 | 4.14 | 4.90 | 4.51 |
| FNR (%) | 7.59 | 8.75 | 8.18 | 5.06 | 5.00 | 5.03 |
| OA (%) | 93.75 | 92.83 | 93.29 | 95.54 | 95.07 | 95.30 |
| PLR | 16.75 | 14.50 | 15.56 | 22.94 | 19.41 | 21.04 |
| NLR | 0.08 | 0.09 | 0.09 | 0.05 | 0.05 | 0.05 |
| Odds ratio | 208.35 | 155.27 | 179.03 | 434.38 | 369.14 | 399.28 |
Figure 3Receiver operating characteristic (ROC) curves for the numeric classifier: (a) the training set and (b) the test set.
Performance indices for the patient classification subsystems (numeric and percentage classifiers) for the training and test sets and for both sets combined.
| Reference number | Year of publication | AI method | Number of units | Classification domain | Performance |
|---|---|---|---|---|---|
| [ | 1993 | A backpropagation ANN and a learning vector quantizer | 392 cases | Diagnosis of thyroid function | Overall accuracy on test data subsets was in the range of 96.4–99.7%, when extreme values used for training the overall accuracy were in the range of 92.7–98.8% |
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| [ | 1996 | Backpropagation algorithm (three layers) | 51 patients | Cell nuclei and patients | Overall accuracy was 90.6% for nuclei classification and 98% on individual patients |
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| [ | 1999 | LVQ classifier | 198 patients | Benign from malignant thyroid lesions. | Overall accuracy: 97.8% |
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| [ | 2006 | Four methods: (1) a linear classifier, (2) a two-layer feedforward ANN, (3) a combined two-layer feedforward ANN generated by the AdaBoost method, and (4) the | 157 patients | Benign from malignant thyroid lesions. | (1) 65.17%, (2) 73.20%, (3) 73.20%, and (4) 74.69% |
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| [ | 2007 | Backpropagation algorithm (three layers) | 197 smears | Follicular carcinomas vs. follicular adenomas | Sensitivity: 97% |
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| [ | 2004 | Multilayer perceptron 15 nodes in the input, 1 hidden layer of 15 units, and an output layer | 453 patients | High vs. low risk for cancer | Sensitivity: 90.6%, specificity: 62.2% |
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| [ | 2006 | Two-layer ANN having inputs as cytological images | 30 images from 10 patients for training and 45 patients with follicular adenoma and 39 patients with follicular carcinoma for testing | Follicular carcinomas vs. follicular adenomas | Overall accuracy: 96% |
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| [ | 2008 | Multiclassifier system | 115 cases | Benign vs. malignant nodules | Overall accuracy: 95.7% |
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| [ | 2011 | LVQ ANN | 335 cases | In follicular neoplasms suspicious for malignancy and in Hürthle cell tumors | Overall accuracy: 94% |
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| [ | 2014 | Optimal transport-based linear embedding for segmented nuclei | 94 patients | Distinguishing between follicular lesions | OA LOT-100% except FVPC vs. FC 87% |
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| [ | 2013 | Supervised learning-based template matching for segmenting cell nuclei | Microscopy images to segment nuclei | Texture and shape variations of the nuclear structures | Not applicable, used for nuclei segmentation |
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| [ | 2018 | ANN model to differentiate FA versus FC on the FNAC material | Microscopy images of FA–FC (26 and 32 cases respectively) | Follicular carcinomas vs. follicular adenomas | Overall accuracy of 93% on image analysis and an overall accuracy of 96% in automatic image classification to differentiate FA and FC |
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| [ | 2018 | Convolutional neural network | 174 microscopy images | Papillary vs. nonpapillary | Sensitivity: 90.8%, specificity: 83.3% |
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| [ | 2020 | Deep learning algorithm for whole slide images (WSIs) | 908 whole slide images | Malignancy prediction | Sensitivity: 92%, specificity: 90.5% |