Literature DB >> 24835183

Accurate diagnosis of thyroid follicular lesions from nuclear morphology using supervised learning.

John A Ozolek1, Akif Burak Tosun2, Wei Wang3, Cheng Chen3, Soheil Kolouri3, Saurav Basu3, Hu Huang3, Gustavo K Rohde4.   

Abstract

Follicular lesions of the thyroid remain significant diagnostic challenges in surgical pathology and cytology. The diagnosis often requires considerable resources and ancillary tests including immunohistochemistry, molecular studies, and expert consultation. Visual analyses of nuclear morphological features, generally speaking, have not been helpful in distinguishing this group of lesions. Here we describe a method for distinguishing between follicular lesions of the thyroid based on nuclear morphology. The method utilizes an optimal transport-based linear embedding for segmented nuclei, together with an adaptation of existing classification methods. We show the method outputs assignments (classification results) which are near perfectly correlated with the clinical diagnosis of several lesion types' lesions utilizing a database of 94 patients in total. Experimental comparisons also show the new method can significantly outperform standard numerical feature-type methods in terms of agreement with the clinical diagnosis gold standard. In addition, the new method could potentially be used to derive insights into biologically meaningful nuclear morphology differences in these lesions. Our methods could be incorporated into a tool for pathologists to aid in distinguishing between follicular lesions of the thyroid. In addition, these results could potentially provide nuclear morphological correlates of biological behavior and reduce health care costs by decreasing histotechnician and pathologist time and obviating the need for ancillary testing.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Image analysis; Nuclear morphology; Optimal transport; Thyroid follicular lesions

Mesh:

Year:  2014        PMID: 24835183      PMCID: PMC4084938          DOI: 10.1016/j.media.2014.04.004

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  29 in total

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Authors:  Zubair W Baloch; Virginia A Livolsi
Journal:  Am J Clin Pathol       Date:  2002-01       Impact factor: 2.493

2.  Automatic segmentation of cell nuclei in Feulgen-stained histological sections of prostate cancer and quantitative evaluation of segmentation results.

Authors:  Birgitte Nielsen; Fritz Albregtsen; Håvard E Danielsen
Journal:  Cytometry A       Date:  2012-05-17       Impact factor: 4.355

3.  Contribution of morphometry in the differential diagnosis of fine-needle thyroid aspirates.

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Journal:  Cytometry B Clin Cytom       Date:  2005-05       Impact factor: 3.058

4.  Advancing the molecular diagnosis of thyroid nodules: defining benign lesions by molecular profiling.

Authors:  David J Finley; Carrie C Lubitz; Christina Wei; Baixin Zhu; Thomas J Fahey
Journal:  Thyroid       Date:  2005-06       Impact factor: 6.568

5.  Differentiation of human follicular thyroid adenomas from carcinomas by gene expression profiling.

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Journal:  Oncol Rep       Date:  2008-02       Impact factor: 3.906

6.  Application of artificial neural network for classification of thyroid follicular tumors.

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7.  A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching.

Authors:  Cheng Chen; Wei Wang; John A Ozolek; Gustavo K Rohde
Journal:  Cytometry A       Date:  2013-04-08       Impact factor: 4.355

8.  A linear optimal transportation framework for quantifying and visualizing variations in sets of images.

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9.  Papillary thyroid carcinoma oncogene (RET/PTC) alters the nuclear envelope and chromatin structure.

Authors:  A H Fischer; J A Bond; P Taysavang; O E Battles; D Wynford-Thomas
Journal:  Am J Pathol       Date:  1998-11       Impact factor: 4.307

10.  Computerized nuclear morphometry in the diagnosis of thyroid lesions with predominant follicular pattern.

Authors:  Ha Aiad; Ag Abdou; Ma Bashandy; An Said; Ss Ezz-Elarab; Aa Zahran
Journal:  Ecancermedicalscience       Date:  2009-09-17
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  14 in total

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3.  A continuous linear optimal transport approach for pattern analysis in image datasets.

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Review 5.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06

6.  High-throughput histopathological image analysis via robust cell segmentation and hashing.

Authors:  Xiaofan Zhang; Fuyong Xing; Hai Su; Lin Yang; Shaoting Zhang
Journal:  Med Image Anal       Date:  2015-11-09       Impact factor: 8.545

7.  Optimal Mass Transport: Signal processing and machine-learning applications.

Authors:  Soheil Kolouri; Serim Park; Matthew Thorpe; Dejan Slepčev; Gustavo K Rohde
Journal:  IEEE Signal Process Mag       Date:  2017-07-11       Impact factor: 12.551

8.  Carnegie Mellon University bioimaging day 2014: Challenges and opportunities in digital pathology.

Authors:  Gustavo K Rohde; John A Ozolek; Anil V Parwani; Liron Pantanowitz
Journal:  J Pathol Inform       Date:  2014-08-28

Review 9.  Artificial Neural Networks as Decision Support Tools in Cytopathology: Past, Present, and Future.

Authors:  Abraham Pouliakis; Efrossyni Karakitsou; Niki Margari; Panagiotis Bountris; Maria Haritou; John Panayiotides; Dimitrios Koutsouris; Petros Karakitsos
Journal:  Biomed Eng Comput Biol       Date:  2016-02-18

10.  Identification of non-activated lymphocytes using three-dimensional refractive index tomography and machine learning.

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Journal:  Sci Rep       Date:  2017-07-27       Impact factor: 4.379

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