Literature DB >> 33272784

DEAH-Box RNA Helicases in Pre-mRNA Splicing.

Francesca De Bortoli1, Sara Espinosa1, Rui Zhao2.   

Abstract

In eukaryotic cells, pre-mRNA splicing is catalyzed by the spliceosome, a highly dynamic molecular machinery that undergoes dramatic conformational and compositional rearrangements throughout the splicing cycle. These crucial rearrangements are largely driven by eight DExD/H-box RNA helicases. Interestingly, the four helicases participating in the late stages of splicing are all DEAH-box helicases that share structural similarities. This review aims to provide an overview of the structure and function of these DEAH-box helicases, including new information provided by recent cryo-electron microscopy structures of the spliceosomal complexes.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DEAH-box RNA helicases; cryo-EM; spliceosome

Year:  2020        PMID: 33272784      PMCID: PMC8112905          DOI: 10.1016/j.tibs.2020.10.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  83 in total

Review 1.  SF1 and SF2 helicases: family matters.

Authors:  Margaret E Fairman-Williams; Ulf-Peter Guenther; Eckhard Jankowsky
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome.

Authors:  Naoko Tanaka; Anna Aronova; Beate Schwer
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

3.  Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components.

Authors:  Zbigniew Warkocki; Peter Odenwälder; Jana Schmitzová; Florian Platzmann; Holger Stark; Henning Urlaub; Ralf Ficner; Patrizia Fabrizio; Reinhard Lührmann
Journal:  Nat Struct Mol Biol       Date:  2009-11-22       Impact factor: 15.369

Review 4.  Mechanical devices of the spliceosome: motors, clocks, springs, and things.

Authors:  J P Staley; C Guthrie
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

5.  Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

6.  Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.

Authors:  Karl Bertram; Dmitry E Agafonov; Olexandr Dybkov; David Haselbach; Majety N Leelaram; Cindy L Will; Henning Urlaub; Berthold Kastner; Reinhard Lührmann; Holger Stark
Journal:  Cell       Date:  2017-08-03       Impact factor: 41.582

7.  The G-patch protein Spp2 couples the spliceosome-stimulated ATPase activity of the DEAH-box protein Prp2 to catalytic activation of the spliceosome.

Authors:  Zbigniew Warkocki; Cornelius Schneider; Sina Mozaffari-Jovin; Jana Schmitzová; Claudia Höbartner; Patrizia Fabrizio; Reinhard Lührmann
Journal:  Genes Dev       Date:  2015-01-01       Impact factor: 11.361

8.  Structure of a pre-catalytic spliceosome.

Authors:  Clemens Plaschka; Pei-Chun Lin; Kiyoshi Nagai
Journal:  Nature       Date:  2017-05-22       Impact factor: 49.962

9.  A unified mechanism for intron and exon definition and back-splicing.

Authors:  Xueni Li; Shiheng Liu; Lingdi Zhang; Aaron Issaian; Ryan C Hill; Sara Espinosa; Shasha Shi; Yanxiang Cui; Kalli Kappel; Rhiju Das; Kirk C Hansen; Z Hong Zhou; Rui Zhao
Journal:  Nature       Date:  2019-09-04       Impact factor: 49.962

10.  Structural analysis of the intrinsically disordered splicing factor Spp2 and its binding to the DEAH-box ATPase Prp2.

Authors:  Florian Hamann; Andreas Schmitt; Filippo Favretto; Romina Hofele; Piotr Neumann; ShengQi Xiang; Henning Urlaub; Markus Zweckstetter; Ralf Ficner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-23       Impact factor: 11.205

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  7 in total

1.  A dual role for the RNA helicase DHX34 in NMD and pre-mRNA splicing and its function in hematopoietic differentiation.

Authors:  Nele Hug; Stuart Aitken; Dasa Longman; Michaela Raab; Hannah Armes; Abigail R Mann; Ana Rio-Machin; Jude Fitzgibbon; Kevin Rouault-Pierre; Javier F Cáceres
Journal:  RNA       Date:  2022-06-29       Impact factor: 5.636

2.  Phytophthora effector PSR1 hijacks the host pre-mRNA splicing machinery to modulate small RNA biogenesis and plant immunity.

Authors:  Xinmeng Gui; Peng Zhang; Dan Wang; Zhan Ding; Xian Wu; Jinxia Shi; Qian-Hua Shen; Yong-Zhen Xu; Wenbo Ma; Yongli Qiao
Journal:  Plant Cell       Date:  2022-08-25       Impact factor: 12.085

Review 3.  The Chloroplast Trans-Splicing RNA-Protein Supercomplex from the Green Alga Chlamydomonas reinhardtii.

Authors:  Ulrich Kück; Olga Schmitt
Journal:  Cells       Date:  2021-02-01       Impact factor: 6.600

Review 4.  DExD/H-box helicases: multifunctional regulators in antiviral innate immunity.

Authors:  Chenhe Su; Yan-Dong Tang; Chunfu Zheng
Journal:  Cell Mol Life Sci       Date:  2021-12-15       Impact factor: 9.261

5.  Prp43/DHX15 exemplify RNA helicase multifunctionality in the gene expression network.

Authors:  Katherine E Bohnsack; Nidhi Kanwal; Markus T Bohnsack
Journal:  Nucleic Acids Res       Date:  2022-08-22       Impact factor: 19.160

Review 6.  Unique role of DDX41, a DEAD-box type RNA helicase, in hematopoiesis and leukemogenesis.

Authors:  Satoru Shinriki; Hirotaka Matsui
Journal:  Front Oncol       Date:  2022-09-02       Impact factor: 5.738

7.  Evidence for complex dynamics during U2 snRNP selection of the intron branchpoint.

Authors:  Ching-Yang Kao; En-Cih Cao; Hsu Lei Wai; Soo-Chen Cheng
Journal:  Nucleic Acids Res       Date:  2021-09-27       Impact factor: 16.971

  7 in total

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