Literature DB >> 20456941

SF1 and SF2 helicases: family matters.

Margaret E Fairman-Williams1, Ulf-Peter Guenther, Eckhard Jankowsky.   

Abstract

Helicases of the superfamily (SF) 1 and 2 are involved in virtually all aspects of RNA and DNA metabolism. SF1 and SF2 helicases share a catalytic core with high structural similarity, but different enzymes even within each SF perform a wide spectrum of distinct functions on diverse substrates. To rationalize similarities and differences between these helicases, we outline a classification based on protein families that are characterized by typical sequence, structural, and mechanistic features. This classification complements and extends existing SF1 and SF2 helicase categorizations and highlights major structural and functional themes for these proteins. We discuss recent data in the context of this unifying view of SF1 and SF2 helicases. Copyright 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20456941      PMCID: PMC2916977          DOI: 10.1016/j.sbi.2010.03.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  98 in total

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Journal:  Biochemistry       Date:  2004-06-22       Impact factor: 3.162

2.  X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA.

Authors:  Harald Dürr; Christian Körner; Marisa Müller; Volker Hickmann; Karl-Peter Hopfner
Journal:  Cell       Date:  2005-05-06       Impact factor: 41.582

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Authors:  Rabiah M Mayas; Jonathan P Staley
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4.  Structure of the motor subunit of type I restriction-modification complex EcoR124I.

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Journal:  Nat Struct Mol Biol       Date:  2008-12-14       Impact factor: 15.369

Review 5.  Structural mechanism of RNA recognition by the RIG-I-like receptors.

Authors:  Mitsutoshi Yoneyama; Takashi Fujita
Journal:  Immunity       Date:  2008-08-15       Impact factor: 31.745

6.  Multiple Escherichia coli RecQ helicase monomers cooperate to unwind long DNA substrates: a fluorescence cross-correlation spectroscopy study.

Authors:  Na Li; Etienne Henry; Elvire Guiot; Pascal Rigolet; Jean-Claude Brochon; Xu-Guang Xi; Eric Deprez
Journal:  J Biol Chem       Date:  2010-01-04       Impact factor: 5.157

7.  Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.

Authors:  Christian B F Andersen; Lionel Ballut; Jesper S Johansen; Hala Chamieh; Klaus H Nielsen; Cristiano L P Oliveira; Jan Skov Pedersen; Bertrand Séraphin; Hervé Le Hir; Gregers Rom Andersen
Journal:  Science       Date:  2006-08-24       Impact factor: 47.728

8.  Motif III in superfamily 2 "helicases" helps convert the binding energy of ATP into a high-affinity RNA binding site in the yeast DEAD-box protein Ded1.

Authors:  Josette Banroques; Monique Doère; Marc Dreyfus; Patrick Linder; N Kyle Tanner
Journal:  J Mol Biol       Date:  2009-12-21       Impact factor: 5.469

9.  Structure of RapA, a Swi2/Snf2 protein that recycles RNA polymerase during transcription.

Authors:  Gary Shaw; Jianhua Gan; Yan Ning Zhou; Huijun Zhi; Priadarsini Subburaman; Rongguang Zhang; Andrzej Joachimiak; Ding Jun Jin; Xinhua Ji
Journal:  Structure       Date:  2008-09-10       Impact factor: 5.006

10.  Structure of the DNA repair helicase XPD.

Authors:  Huanting Liu; Jana Rudolf; Kenneth A Johnson; Stephen A McMahon; Muse Oke; Lester Carter; Anne-Marie McRobbie; Sara E Brown; James H Naismith; Malcolm F White
Journal:  Cell       Date:  2008-05-30       Impact factor: 41.582

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  399 in total

1.  Mechanism of start site selection by RNA polymerase II: interplay between TFIIB and Ssl2/XPB helicase subunit of TFIIH.

Authors:  Shivani Goel; Shankarling Krishnamurthy; Michael Hampsey
Journal:  J Biol Chem       Date:  2011-11-11       Impact factor: 5.157

2.  Structural insights into the activation of RIG-I, a nanosensor for viral RNAs.

Authors:  Qiu-Xing Jiang; Zhijian J Chen
Journal:  EMBO Rep       Date:  2011-12-23       Impact factor: 8.807

3.  Structural basis of RNA recognition and activation by innate immune receptor RIG-I.

Authors:  Fuguo Jiang; Anand Ramanathan; Matthew T Miller; Guo-Qing Tang; Michael Gale; Smita S Patel; Joseph Marcotrigiano
Journal:  Nature       Date:  2011-09-25       Impact factor: 49.962

4.  The RIG-I ATPase domain structure reveals insights into ATP-dependent antiviral signalling.

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Journal:  EMBO Rep       Date:  2011-10-28       Impact factor: 8.807

Review 5.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 6.  RNA folding in living cells.

Authors:  Georgeta Zemora; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

Review 7.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

8.  Structure of chromatin remodeler Swi2/Snf2 in the resting state.

Authors:  Xian Xia; Xiaoyu Liu; Tong Li; Xianyang Fang; Zhucheng Chen
Journal:  Nat Struct Mol Biol       Date:  2016-07-11       Impact factor: 15.369

9.  Rothmund-Thomson Syndrome-like RECQL4 truncating mutations cause a haploinsufficient low bone mass phenotype in mice.

Authors:  Wilson Castillo-Tandazo; Ann E Frazier; Natalie A Sims; Monique F Smeets; Carl R Walkley
Journal:  Mol Cell Biol       Date:  2020-12-23       Impact factor: 4.272

10.  ARCH domain of XPD, an anchoring platform for CAK that conditions TFIIH DNA repair and transcription activities.

Authors:  Wassim Abdulrahman; Izarn Iltis; Laura Radu; Cathy Braun; Anne Maglott-Roth; Christophe Giraudon; Jean-Marc Egly; Arnaud Poterszman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

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