| Literature DB >> 33126636 |
Ibon Alkorta1, José Elguero1, Cristina Trujillo2, Goar Sánchez-Sanz3,4.
Abstract
The geometry, energy and electron density properties of the 1:1, 1:2 and 1:3 complexes between cyclic (Entities:
Keywords: electron density; non covalent interactions; pyrazolate; regium bonds
Mesh:
Substances:
Year: 2020 PMID: 33126636 PMCID: PMC7663457 DOI: 10.3390/ijms21218036
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Structure of the studied compounds. (a) General structure, full red circles the metal; empty blue circles the ligand. (b) Imidazolate ligands linked by N and C atoms. (c) Phenylene ligands linked by C atoms. (d) 1,2-Dicarba-closo-dodecaborane ligands linked by C atoms; the structure of 1,2-dicarba-closo-dodecaborane was simplified. (e) Pyrazolate ligands linked by N atoms.
Figure 2Schematic view of the possible complexes with X− (X = F, Cl and Br). The scheme shows the possible interaction sites.
Figure 3Molecular electrostatic potential of the (Pz-M)3 compound on the 0.001 au electron density isosurface. The color range associated to the MESP is between red ≤ −0.020 au and blue ≥ 0.015. Stationary values are given in kJ/mol.
Figure 4Molecular graph of the three minima located for the 1:1 (Pz-Au)3: Cl−. The symmetry of each complex is indicated. Small green and red dots indicate the position of the bond and ring critical points, respectively.
Binding energy, Eb, (kJ mol−1) for the 1:1 complexes.
| F− | 1:1 Apical | 1:1 Planar | 1:1 CH (4) |
|---|---|---|---|
| Au | −107.4 | −120.4 | −87.0 |
| Ag | −195.5 | −153.3 | −73.7 |
| Cu | −171.8 | −204.0 | −76.8 |
| Cl− | |||
| Au | −74.4 | −88.9 | −47.1 |
| Ag | −143.0 | −116.8 | −38.4 |
| Cu | −121.2 | −111.9 | −40.7 |
| Br− | |||
| Au | −78.2 | −86.7 | −43.2 |
| Ag | −142.3 | −113.2 | −35.2 |
| Cu | −112.9 | −102.0 | −37.3 |
Figure 5Binding energies in kJ/mol for each type of complex and anions with respect to the metal involved at the MP2/aug’-cc-pVDZ computational level.
Geometrical intermolecular M⋯X− and H⋯X− distances (Å) in the 1:1 complexes.
| F− | Cl− | Br− | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Complex | Dist. | Au | Ag | Cu | Au | Ag | Cu | Au | Ag | Cu |
| Apical | M⋯X | 2.558 | 2.379 | 2.135 | 3.017 | 2.758 | 2.556 | 3.127 | 2.856 | 2.692 |
| Planar | M⋯X | 2.434 | 2.256 | 2.016 | 2.956 | 2.623 | 2.430 | 3.088 | 2.722 | 2.575 |
| H(3)⋯X | 2.336 | 2.483 | 2.279 | 2.614 | 2.790 | 2.575 | 2.706 | 2.889 | 2.665 | |
| CH(4) | H(4)⋯X | 1.508 | 1.554 | 1.551 | 2.317 | 2.366 | 2.357 | 2.507 | 2.556 | 2.547 |
Figure 6Molecular graph of the three minima located for the 1:2 (Pz-Au)3 and Br−. The symmetry of each complex is indicated. Small green, red and blue dots indicate the position of the bond, ring and cage critical points, respectively.
Binding energies (kJ mol−1) of the 1:2 complexes, (Pz-M)3: X2− at the MP2/aug’-cc-pVDZ computational level.
| 1:2 Apical | 1:2 Planar | 1:2 CH(4) | |
|---|---|---|---|
|
| |||
| Au | 113.1 | −35.7 | −39.6 |
| Ag | −46.4 | −79.0 | −18.6 |
| Cu | −34.7 | −82.3 | −20.3 |
|
| |||
| Au | 139.5 | 23.9 | 15.8 |
| Ag | 23.3 | −25.8 | 29.2 |
| Cu | 93.5 | 2.1 | 28.1 |
|
| |||
| Au | 120.4 | 20.2 | 18.8 |
| Ag | 15.3 | −24.0 | 31.2 |
| Cu | 94.1 | 10.6 | 30.3 |
Intermolecular M⋯X− and H⋯X− distances (Å) in the 1:2 complexes.
| F− | Cl− | Br− | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Complex | Dist. | Au | Ag | Cu | Au | Ag | Cu | Au | Ag | Cu |
| Apical | M⋯X | 2.613 | 2.437 | 2.211 | 3.226 | 2.845 | 2.707 | 3.339 | 2.949 | 2.892 |
| Planar | M⋯X | 4.424 a | 2.327 | 2.090 | 3.325 | 2.734 | 2.639 | 3.455 | 2.849 | 2.962 |
| H(3)⋯·X b | 1.592 | 2.179 | 2.260 | 2.591 | 2.720 | 2.550 | 2.727 | 2.827 | 2.640 | |
| CH(4) | H(4)⋯·X | 1.619 | 1.660 | 1.659 | 2.478 | 2.538 | 2.532 | 2.696 | 2.775 | 2.756 |
a In this complex, the F− ions interact only with one H(3) atoms. b The shorter of the two X⋯H(3) distances is listed.
Figure 7Molecular graph of the two minima located for the 1:3 (Pz-Au)3:F−. The symmetry of each complex is indicated. Small green and red dots indicate the position of the bond and ring critical points, respectively.
Binding energies (kJ mol−1) for the 1:3 planar and CH(4) complexes.
| F− | Cl− | Br− | ||||
|---|---|---|---|---|---|---|
| 1:3 Planar | 1:3 CH(4) | 1:3 Planar | 1:3 CH(4) | 1:3 Planar | 1:3 CH(4) | |
| Au | Dissociation | 136.2 | Dissociation | 188.1 | Dissociation | 188.2 |
| Ag | 224.6 | 160.3 | 260.2 | 203.1 | 252.3 | 201.9 |
| Cu | 252.1 | 163.9 | Dissociation | 206.3 | Dissociation | 205.0 |
Geometrical intermolecular distances (Å) in the 1:3 complexes.
| F− | Cl− | Br− | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Complex | Dist. | Au | Ag | Cu | Au | Ag | Cu | Au | Ag | Cu |
| Planar | M⋯X | 2.411 | 2.211 | 3.025 | 3.238 | |||||
| H(3)⋯·X | 2.461 | 2.387 | 2.863 | 2.942 | ||||||
| CH(4) | H(4)⋯·X | 1.735 | 1.777 | 1.781 | 2.651 | 2.740 | 2.743 | 2.864 | 2.969 | 2.970 |
Figure 8Structure of refcodes ELODOY (up) and OBOQAY (down). Only the (Pz-M)3: anions are shown for clarity.