Literature DB >> 30805581

Cations brought together by hydrogen bonds: the protonated pyridine-boronic acid dimer explained.

Íñigo Iribarren1, M Merced Montero-Campillo, Ibon Alkorta, José Elguero, David Quiñonero.   

Abstract

According to the Cambridge Structural Database, protonated pyridine-boronic acid dimers exist in the solid phase, apparently defying repulsive coulombic forces. In order to understand why these cation-cation systems are stable, we carried out M06-2X/6-311++G(3df,2pd) electronic structure calculations and used a set of computational tools (energy partitioning, topology of the electron density and electric field maps). The behavior of the charged dimers was compared with the corresponding neutral systems, and the effect of counterions (Br- and BF4-) and the solvent (PCM model) on the binding energies has been considered. In the gas-phase, the charged dimers present positive binding energies but are local minima, with a barrier (16-19 kJ mol-1) preventing dissociation. Once the environment is included via solvent effects or counterions, the binding energies become negative; remarkably, the strength of the interaction is very similar in both neutral and charged systems when a polar solvent is considered. Essentially, all methods used evidence that the intermolecular region where the HBs take place is very similar for both neutral and charged dimers. The energy partitioning explains that repulsion and electrostatic terms are compensated by the desolvation and exchange terms in polar solvents, thus giving stability to the charged dimer.

Entities:  

Year:  2019        PMID: 30805581     DOI: 10.1039/c8cp07542e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  2 in total

1.  Thioflavin-modified molecularly imprinted hydrogel for fluorescent-based non-enzymatic glucose detection in wound exudate.

Authors:  Giorgia Giovannini; Paolo Cinelli; Luciano F Boesel; René M Rossi
Journal:  Mater Today Bio       Date:  2022-04-09

2.  Interaction between Trinuclear Regium Complexes of Pyrazolate and Anions, a Computational Study.

Authors:  Ibon Alkorta; José Elguero; Cristina Trujillo; Goar Sánchez-Sanz
Journal:  Int J Mol Sci       Date:  2020-10-28       Impact factor: 5.923

  2 in total

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