Literature DB >> 33058374

17 O NMR Studies of Yeast Ubiquitin in Aqueous Solution and in the Solid State.

Binyang Lin1, Ivan Hung2, Zhehong Gan2, Po-Hsiu Chien2, Holly L Spencer3, Steven P Smith3, Gang Wu1.   

Abstract

We report a general method for amino acid-type specific 17 O-labeling of recombinant proteins in Escherichia coli. In particular, we have prepared several [1-13 C,17 O]-labeled yeast ubiquitin (Ub) samples including Ub-[1-13 C,17 O]Gly, Ub-[1-13 C,17 O]Tyr, and Ub-[1-13 C,17 O]Phe using the auxotrophic E. coli strain DL39 GlyA λDE3 (aspC- tyrB- ilvE- glyA- λDE3). We have also produced Ub-[η-17 O]Tyr, in which the phenolic group of Tyr59 is 17 O-labeled. We show for the first time that 17 O NMR signals from protein terminal residues and side chains can be readily detected in aqueous solution. We also reported solid-state 17 O NMR spectra for Ub-[1-13 C,17 O]Tyr and Ub-[1-13 C,17 O]Phe obtained at an ultrahigh magnetic field, 35.2 T (1.5 GHz for 1 H). This work represents a significant advance in the field of 17 O NMR studies of proteins.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  17O NMR; auxotrophic strains; isotope labeling; recombinant protein; ubiquitin

Year:  2020        PMID: 33058374      PMCID: PMC8175035          DOI: 10.1002/cbic.202000659

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  38 in total

1.  Quadrupole central transition 17O NMR spectroscopy of biological macromolecules in aqueous solution.

Authors:  Jianfeng Zhu; Gang Wu
Journal:  J Am Chem Soc       Date:  2010-12-22       Impact factor: 15.419

2.  Ion solvation by channel carbonyls characterized by 17O solid-state NMR at 21 T.

Authors:  Jun Hu; Eduard Y Chekmenev; Zhehong Gan; Peter L Gor'kov; Saikat Saha; William W Brey; Timothy A Cross
Journal:  J Am Chem Soc       Date:  2005-08-31       Impact factor: 15.419

Review 3.  Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR.

Authors:  Ann McDermott
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

4.  Structure of ubiquitin refined at 1.8 A resolution.

Authors:  S Vijay-Kumar; C E Bugg; W J Cook
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

Review 5.  Structure and Dynamics of Membrane Proteins from Solid-State NMR.

Authors:  Venkata S Mandala; Jonathan K Williams; Mei Hong
Journal:  Annu Rev Biophys       Date:  2018-03-02       Impact factor: 12.981

Review 6.  Multidimensional heteronuclear nuclear magnetic resonance of proteins.

Authors:  G M Clore; A M Gronenborn
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

7.  Solid-State 17 O NMR Reveals Hydrogen-Bonding Energetics: Not All Low-Barrier Hydrogen Bonds Are Strong.

Authors:  Jiasheng Lu; Ivan Hung; Andreas Brinkmann; Zhehong Gan; Xianqi Kong; Gang Wu
Journal:  Angew Chem Int Ed Engl       Date:  2017-02-22       Impact factor: 15.336

8.  Quadrupole-central-transition 17O NMR spectroscopy of protein-ligand complexes in solution.

Authors:  Jianfeng Zhu; Irene C M Kwan; Gang Wu
Journal:  J Am Chem Soc       Date:  2009-10-14       Impact factor: 15.419

9.  Oxygen-17 nuclear magnetic resonance spectroscopic studies of carbonmonoxyperoxidases.

Authors:  H C Lee; K Cummings; K Hall; L P Hager; E Oldfield
Journal:  J Biol Chem       Date:  1988-11-05       Impact factor: 5.157

10.  Structural influence of cation binding to recombinant human brain S100b: evidence for calcium-induced exposure of a hydrophobic surface.

Authors:  S P Smith; K R Barber; S D Dunn; G S Shaw
Journal:  Biochemistry       Date:  1996-07-09       Impact factor: 3.162

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  3 in total

1.  Solid-state 17O NMR study of α-d-glucose: exploring new frontiers in isotopic labeling, sensitivity enhancement, and NMR crystallography.

Authors:  Jiahui Shen; Victor Terskikh; Jochem Struppe; Alia Hassan; Martine Monette; Ivan Hung; Zhehong Gan; Andreas Brinkmann; Gang Wu
Journal:  Chem Sci       Date:  2022-01-03       Impact factor: 9.825

2.  The clinical drug candidate anle138b binds in a cavity of lipidic α-synuclein fibrils.

Authors:  Leif Antonschmidt; Dirk Matthes; Rıza Dervişoğlu; Benedikt Frieg; Christian Dienemann; Andrei Leonov; Evgeny Nimerovsky; Vrinda Sant; Sergey Ryazanov; Armin Giese; Gunnar F Schröder; Stefan Becker; Bert L de Groot; Christian Griesinger; Loren B Andreas
Journal:  Nat Commun       Date:  2022-09-14       Impact factor: 17.694

Review 3.  17O NMR Spectroscopy: A Novel Probe for Characterizing Protein Structure and Folding.

Authors:  Srinivasan Muniyappan; Yuxi Lin; Young-Ho Lee; Jin Hae Kim
Journal:  Biology (Basel)       Date:  2021-05-21
  3 in total

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