Literature DB >> 34064021

17O NMR Spectroscopy: A Novel Probe for Characterizing Protein Structure and Folding.

Srinivasan Muniyappan1, Yuxi Lin2, Young-Ho Lee2,3,4,5, Jin Hae Kim1.   

Abstract

Oxygen is a key atom that maintains biomolecular structures, regulates various physiological processes, and mediates various biomolecular interactions. Oxygen-17 (17O), therefore, has been proposed as a useful probe that can provide detailed information about various physicochemical features of proteins. This is attributed to the facts that (1) 17O is an active isotope for nuclear magnetic resonance (NMR) spectroscopic approaches; (2) NMR spectroscopy is one of the most suitable tools for characterizing the structural and dynamical features of biomolecules under native-like conditions; and (3) oxygen atoms are frequently involved in essential hydrogen bonds for the structural and functional integrity of proteins or related biomolecules. Although 17O NMR spectroscopic investigations of biomolecules have been considerably hampered due to low natural abundance and the quadruple characteristics of the 17O nucleus, recent theoretical and technical developments have revolutionized this methodology to be optimally poised as a unique and widely applicable tool for determining protein structure and dynamics. In this review, we recapitulate recent developments in 17O NMR spectroscopy to characterize protein structure and folding. In addition, we discuss the highly promising advantages of this methodology over other techniques and explain why further technical and experimental advancements are highly desired.

Entities:  

Keywords:  17O NMR spectroscopy; oxygen-17; protein folding; protein structures

Year:  2021        PMID: 34064021     DOI: 10.3390/biology10060453

Source DB:  PubMed          Journal:  Biology (Basel)        ISSN: 2079-7737


  44 in total

1.  Allosteric transitions in hemoglobin revisited.

Authors:  Naoya Shibayama
Journal:  Biochim Biophys Acta Gen Subj       Date:  2019-04-02       Impact factor: 3.770

2.  Solid-State 17O NMR of Unstable Acyl-Enzyme Intermediates: A Direct Probe of Hydrogen Bonding Interactions in the Oxyanion Hole of Serine Proteases.

Authors:  Aaron W Tang; Xianqi Kong; Victor Terskikh; Gang Wu
Journal:  J Phys Chem B       Date:  2016-10-21       Impact factor: 2.991

Review 3.  Integrating cryo-EM and NMR data.

Authors:  James A Geraets; Karunakar R Pothula; Gunnar F Schröder
Journal:  Curr Opin Struct Biol       Date:  2020-02-03       Impact factor: 6.809

4.  Ultra-high resolution 17O solid-state NMR spectroscopy of biomolecules: a comprehensive spectral analysis of monosodium L-glutamate·monohydrate.

Authors:  Alan Wong; Andy P Howes; Jonathan R Yates; Anthony Watts; Tiit Anupõld; Jaan Past; Ago Samoson; Ray Dupree; Mark E Smith
Journal:  Phys Chem Chem Phys       Date:  2011-05-20       Impact factor: 3.676

5.  A solid-state (17)O nuclear magnetic resonance study of nucleic acid bases.

Authors:  Gang Wu; Shuan Dong; Ramsey Ida; Nitin Reen
Journal:  J Am Chem Soc       Date:  2002-02-27       Impact factor: 15.419

6.  A solid-state (17)O NMR study of L-tyrosine in different ionization states: implications for probing tyrosine side chains in proteins.

Authors:  Jianfeng Zhu; Justin Y C Lau; Gang Wu
Journal:  J Phys Chem B       Date:  2010-09-09       Impact factor: 2.991

7.  Demonstration of positionally disordered water within a protein hydrophobic cavity by NMR.

Authors:  J A Ernst; R T Clubb; H X Zhou; A M Gronenborn; G M Clore
Journal:  Science       Date:  1995-03-24       Impact factor: 47.728

8.  Agonist-bound adenosine A2A receptor structures reveal common features of GPCR activation.

Authors:  Guillaume Lebon; Tony Warne; Patricia C Edwards; Kirstie Bennett; Christopher J Langmead; Andrew G W Leslie; Christopher G Tate
Journal:  Nature       Date:  2011-05-18       Impact factor: 49.962

Review 9.  Water in protein hydration and ligand recognition.

Authors:  Manuela Maurer; Chris Oostenbrink
Journal:  J Mol Recognit       Date:  2019-08-27       Impact factor: 2.891

10.  Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex.

Authors:  Diego F Gauto; Leandro F Estrozi; Charles D Schwieters; Gregory Effantin; Pavel Macek; Remy Sounier; Astrid C Sivertsen; Elena Schmidt; Rime Kerfah; Guillaume Mas; Jacques-Philippe Colletier; Peter Güntert; Adrien Favier; Guy Schoehn; Paul Schanda; Jerome Boisbouvier
Journal:  Nat Commun       Date:  2019-06-19       Impact factor: 14.919

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