Literature DB >> 33020616

Modulating gene regulation to treat genetic disorders.

Navneet Matharu1,2,3, Nadav Ahituv4,5.   

Abstract

Over a thousand diseases are caused by mutations that alter gene expression levels. The potential of nuclease-deficient zinc fingers, TALEs or CRISPR fusion systems to treat these diseases by modulating gene expression has recently emerged. These systems can be applied to modify the activity of gene-regulatory elements - promoters, enhancers, silencers and insulators, subsequently changing their target gene expression levels to achieve therapeutic benefits - an approach termed cis-regulation therapy (CRT). Here, we review emerging CRT technologies and assess their therapeutic potential for treating a wide range of diseases caused by abnormal gene dosage. The challenges facing the translation of CRT into the clinic are discussed.

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Year:  2020        PMID: 33020616     DOI: 10.1038/s41573-020-0083-7

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  170 in total

1.  Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach.

Authors:  Belinda Giardine; Joseph Borg; Douglas R Higgs; Kenneth R Peterson; Sjaak Philipsen; Donna Maglott; Belinda K Singleton; David J Anstee; A Nazli Basak; Barnaby Clark; Flavia C Costa; Paula Faustino; Halyna Fedosyuk; Alex E Felice; Alain Francina; Renzo Galanello; Monica V E Gallivan; Marianthi Georgitsi; Richard J Gibbons; Piero C Giordano; Cornelis L Harteveld; James D Hoyer; Martin Jarvis; Philippe Joly; Emmanuel Kanavakis; Panagoula Kollia; Stephan Menzel; Webb Miller; Kamran Moradkhani; John Old; Adamantia Papachatzopoulou; Manoussos N Papadakis; Petros Papadopoulos; Sonja Pavlovic; Lucia Perseu; Milena Radmilovic; Cathy Riemer; Stefania Satta; Iris Schrijver; Maja Stojiljkovic; Swee Lay Thein; Jan Traeger-Synodinos; Ray Tully; Takahito Wada; John S Waye; Claudia Wiemann; Branka Zukic; David H K Chui; Henri Wajcman; Ross C Hardison; George P Patrinos
Journal:  Nat Genet       Date:  2011-03-20       Impact factor: 38.330

Review 2.  Towards a comprehensive catalogue of validated and target-linked human enhancers.

Authors:  Molly Gasperini; Jacob M Tome; Jay Shendure
Journal:  Nat Rev Genet       Date:  2020-01-27       Impact factor: 53.242

Review 3.  Characterization of noncoding regulatory DNA in the human genome.

Authors:  Ran Elkon; Reuven Agami
Journal:  Nat Biotechnol       Date:  2017-08-08       Impact factor: 54.908

4.  A functional element necessary for fetal hemoglobin silencing.

Authors:  Vijay G Sankaran; Jian Xu; Rachel Byron; Harvey A Greisman; Chris Fisher; David J Weatherall; Daniel E Sabath; Mark Groudine; Stuart H Orkin; Anuja Premawardhena; M A Bender
Journal:  N Engl J Med       Date:  2011-09-01       Impact factor: 91.245

5.  CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency.

Authors:  Navneet Matharu; Sawitree Rattanasopha; Serena Tamura; Lenka Maliskova; Yi Wang; Adelaide Bernard; Aaron Hardin; Walter L Eckalbar; Christian Vaisse; Nadav Ahituv
Journal:  Science       Date:  2018-12-13       Impact factor: 47.728

Review 6.  cis-regulatory mutations are a genetic cause of human limb malformations.

Authors:  Julia E VanderMeer; Nadav Ahituv
Journal:  Dev Dyn       Date:  2011-01-11       Impact factor: 3.780

7.  ClinGen--the Clinical Genome Resource.

Authors:  Heidi L Rehm; Jonathan S Berg; Lisa D Brooks; Carlos D Bustamante; James P Evans; Melissa J Landrum; David H Ledbetter; Donna R Maglott; Christa Lese Martin; Robert L Nussbaum; Sharon E Plon; Erin M Ramos; Stephen T Sherry; Michael S Watson
Journal:  N Engl J Med       Date:  2015-05-27       Impact factor: 91.245

Review 8.  Gene Regulatory Elements, Major Drivers of Human Disease.

Authors:  Sumantra Chatterjee; Nadav Ahituv
Journal:  Annu Rev Genomics Hum Genet       Date:  2017-04-07       Impact factor: 8.929

9.  Interrogation of enhancer function by enhancer-targeting CRISPR epigenetic editing.

Authors:  Kailong Li; Yuxuan Liu; Hui Cao; Yuannyu Zhang; Zhimin Gu; Xin Liu; Andy Yu; Pranita Kaphle; Kathryn E Dickerson; Min Ni; Jian Xu
Journal:  Nat Commun       Date:  2020-01-24       Impact factor: 14.919

10.  ClinVar: public archive of interpretations of clinically relevant variants.

Authors:  Melissa J Landrum; Jennifer M Lee; Mark Benson; Garth Brown; Chen Chao; Shanmuga Chitipiralla; Baoshan Gu; Jennifer Hart; Douglas Hoffman; Jeffrey Hoover; Wonhee Jang; Kenneth Katz; Michael Ovetsky; George Riley; Amanjeev Sethi; Ray Tully; Ricardo Villamarin-Salomon; Wendy Rubinstein; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

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  12 in total

1.  Epigenetic repression of gonadotropin gene expression via a GnRH-mediated DNA delivery system.

Authors:  Lilach Pnueli; Philippa Melamed
Journal:  Gene Ther       Date:  2022-03-17       Impact factor: 5.250

2.  High-throughput characterization of the role of non-B DNA motifs on promoter function.

Authors:  Ilias Georgakopoulos-Soares; Jesus Victorino; Guillermo E Parada; Vikram Agarwal; Jingjing Zhao; Hei Yuen Wong; Mubarak Ishaq Umar; Orry Elor; Allan Muhwezi; Joon-Yong An; Stephan J Sanders; Chun Kit Kwok; Fumitaka Inoue; Martin Hemberg; Nadav Ahituv
Journal:  Cell Genom       Date:  2022-03-15

Review 3.  Emerging therapeutic targets for cerebral edema.

Authors:  Ruchira M Jha; Sudhanshu P Raikwar; Sandra Mihaljevic; Amanda M Casabella; Joshua S Catapano; Anupama Rani; Shashvat Desai; Volodymyr Gerzanich; J Marc Simard
Journal:  Expert Opin Ther Targets       Date:  2022-01-02       Impact factor: 6.797

4.  A synthetic transcription platform for programmable gene expression in mammalian cells.

Authors:  William C W Chen; Leonid Gaidukov; Yong Lai; Ming-Ru Wu; Jicong Cao; Michael J Gutbrod; Gigi C G Choi; Rachel P Utomo; Ying-Chou Chen; Liliana Wroblewska; Manolis Kellis; Lin Zhang; Ron Weiss; Timothy K Lu
Journal:  Nat Commun       Date:  2022-10-18       Impact factor: 17.694

5.  Diversification of the CRISPR Toolbox: Applications of CRISPR-Cas Systems Beyond Genome Editing.

Authors:  Sarah Balderston; Gabrielle Clouse; Juan-José Ripoll; Grace K Pratt; Giedrius Gasiunas; Jens-Ole Bock; Eric Paul Bennett; Kiana Aran
Journal:  CRISPR J       Date:  2021-06

Review 6.  Identification of differential microRNAs and messenger RNAs resulting from ASXL transcriptional regulator 3 knockdown during during heart development.

Authors:  Ze-Qun Liu; Mi Cheng; Fang Fu; Ru Li; Jin Han; Xin Yang; Qiong Deng; Lu-Shan Li; Ting-Ying Lei; Dong-Zhi Li; Can Liao
Journal:  Bioengineered       Date:  2022-04       Impact factor: 6.832

Review 7.  Genomic Context and Mechanisms of the ACVR1 Mutation in Fibrodysplasia Ossificans Progressiva.

Authors:  Roberto Ravazzolo; Renata Bocciardi
Journal:  Biomedicines       Date:  2021-02-05

8.  The HPSE Gene Insulator-A Novel Regulatory Element That Affects Heparanase Expression, Stem Cell Mobilization, and the Risk of Acute Graft versus Host Disease.

Authors:  Olga Ostrovsky; Polina Baryakh; Yan Morgulis; Margarita Mayorov; Nira Bloom; Katia Beider; Avichai Shimoni; Israel Vlodavsky; Arnon Nagler
Journal:  Cells       Date:  2021-09-23       Impact factor: 6.600

Review 9.  Key regulators of sensitivity to immunomodulatory drugs in cancer treatment.

Authors:  Shichao Wang; Zhiyue Li; Shaobing Gao
Journal:  Biomark Res       Date:  2021-06-05

Review 10.  Gene Editing and Modulation: the Holy Grail for the Genetic Epilepsies?

Authors:  Jenna C Carpenter; Gabriele Lignani
Journal:  Neurotherapeutics       Date:  2021-07-07       Impact factor: 7.620

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