Literature DB >> 36257931

A synthetic transcription platform for programmable gene expression in mammalian cells.

William C W Chen1,2,3,4,5, Leonid Gaidukov6,7, Yong Lai6,8, Ming-Ru Wu6,9, Jicong Cao6, Michael J Gutbrod10,11, Gigi C G Choi6,12, Rachel P Utomo6,13, Ying-Chou Chen6,8,14, Liliana Wroblewska15, Manolis Kellis10,11, Lin Zhang16, Ron Weiss6,7, Timothy K Lu17,18,19.   

Abstract

Precise, scalable, and sustainable control of genetic and cellular activities in mammalian cells is key to developing precision therapeutics and smart biomanufacturing. Here we create a highly tunable, modular, versatile CRISPR-based synthetic transcription system for the programmable control of gene expression and cellular phenotypes in mammalian cells. Genetic circuits consisting of well-characterized libraries of guide RNAs, binding motifs of synthetic operators, transcriptional activators, and additional genetic regulatory elements express mammalian genes in a highly predictable and tunable manner. We demonstrate the programmable control of reporter genes episomally and chromosomally, with up to 25-fold more activity than seen with the EF1α promoter, in multiple cell types. We use these circuits to program the secretion of human monoclonal antibodies and to control T-cell effector function marked by interferon-γ production. Antibody titers and interferon-γ concentrations significantly correlate with synthetic promoter strengths, providing a platform for programming gene expression and cellular function in diverse applications.
© 2022. The Author(s).

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Year:  2022        PMID: 36257931      PMCID: PMC9579178          DOI: 10.1038/s41467-022-33287-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   17.694


  57 in total

Review 1.  Recent advances in large-scale production of monoclonal antibodies and related proteins.

Authors:  Abhinav A Shukla; Jörg Thömmes
Journal:  Trends Biotechnol       Date:  2010-03-19       Impact factor: 19.536

2.  Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.

Authors:  Sara J Cooper; Nathan D Trinklein; Elizabeth D Anton; Loan Nguyen; Richard M Myers
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

Review 3.  Genome editing. The new frontier of genome engineering with CRISPR-Cas9.

Authors:  Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

4.  Engineered CHO cells for production of diverse, homogeneous glycoproteins.

Authors:  Zhang Yang; Shengjun Wang; Adnan Halim; Morten Alder Schulz; Morten Frodin; Shamim H Rahman; Malene B Vester-Christensen; Carsten Behrens; Claus Kristensen; Sergey Y Vakhrushev; Eric Paul Bennett; Hans H Wandall; Henrik Clausen
Journal:  Nat Biotechnol       Date:  2015-07-20       Impact factor: 54.908

5.  Introns as Gene Regulators: A Brick on the Accelerator.

Authors:  Alan B Rose
Journal:  Front Genet       Date:  2019-02-07       Impact factor: 4.599

6.  Systematic comparison of constitutive promoters and the doxycycline-inducible promoter.

Authors:  Jane Yuxia Qin; Li Zhang; Kayla L Clift; Imge Hulur; Andy Peng Xiang; Bing-Zhong Ren; Bruce T Lahn
Journal:  PLoS One       Date:  2010-05-12       Impact factor: 3.240

7.  Revealing Key Determinants of Clonal Variation in Transgene Expression in Recombinant CHO Cells Using Targeted Genome Editing.

Authors:  Jae Seong Lee; Jin Hyoung Park; Tae Kwang Ha; Mojtaba Samoudi; Nathan E Lewis; Bernhard O Palsson; Helene Faustrup Kildegaard; Gyun Min Lee
Journal:  ACS Synth Biol       Date:  2018-11-14       Impact factor: 5.110

8.  High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice.

Authors:  Jin Hee Kim; Sang-Rok Lee; Li-Hua Li; Hye-Jeong Park; Jeong-Hoh Park; Kwang Youl Lee; Myeong-Kyu Kim; Boo Ahn Shin; Seok-Yong Choi
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

9.  Comparison of Cas9 activators in multiple species.

Authors:  Alejandro Chavez; Marcelle Tuttle; Benjamin W Pruitt; Ben Ewen-Campen; Raj Chari; Dmitry Ter-Ovanesyan; Sabina J Haque; Ryan J Cecchi; Emma J K Kowal; Joanna Buchthal; Benjamin E Housden; Norbert Perrimon; James J Collins; George Church
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

10.  A multi-landing pad DNA integration platform for mammalian cell engineering.

Authors:  Leonid Gaidukov; Liliana Wroblewska; Brian Teague; Tom Nelson; Xin Zhang; Yan Liu; Kalpana Jagtap; Selamawit Mamo; Wen Allen Tseng; Alexis Lowe; Jishnu Das; Kalpanie Bandara; Swetha Baijuraj; Nevin M Summers; Timothy K Lu; Lin Zhang; Ron Weiss
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

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