Literature DB >> 21509892

cis-regulatory mutations are a genetic cause of human limb malformations.

Julia E VanderMeer1, Nadav Ahituv.   

Abstract

The underlying mutations that cause human limb malformations are often difficult to determine, particularly for limb malformations that occur as isolated traits. Evidence from a variety of studies shows that cis-regulatory mutations, specifically in enhancers, can lead to some of these isolated limb malformations. Here, we provide a review of human limb malformations that have been shown to be caused by enhancer mutations and propose that cis-regulatory mutations will continue to be identified as the cause of additional human malformations as our understanding of regulatory sequences improves.
Copyright © 2010 Wiley-Liss, Inc.

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Year:  2011        PMID: 21509892      PMCID: PMC3174732          DOI: 10.1002/dvdy.22535

Source DB:  PubMed          Journal:  Dev Dyn        ISSN: 1058-8388            Impact factor:   3.780


  89 in total

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Journal:  Genomics       Date:  1999-05-01       Impact factor: 5.736

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Authors:  R Korn; M Schoor; H Neuhaus; U Henseling; R Soininen; J Zachgo; A Gossler
Journal:  Mech Dev       Date:  1992-11       Impact factor: 1.882

4.  ChIP-Seq identification of weakly conserved heart enhancers.

Authors:  Matthew J Blow; David J McCulley; Zirong Li; Tao Zhang; Jennifer A Akiyama; Amy Holt; Ingrid Plajzer-Frick; Malak Shoukry; Crystal Wright; Feng Chen; Veena Afzal; James Bristow; Bing Ren; Brian L Black; Edward M Rubin; Axel Visel; Len A Pennacchio
Journal:  Nat Genet       Date:  2010-08-22       Impact factor: 38.330

5.  Regulatory divergence modifies limb length between mammals.

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6.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

7.  Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus.

Authors:  Hanna M Petrykowska; Christopher M Vockley; Laura Elnitski
Journal:  Genome Res       Date:  2008-04-24       Impact factor: 9.043

8.  A cis-regulatory site downregulates PTHLH in translocation t(8;12)(q13;p11.2) and leads to Brachydactyly Type E.

Authors:  Philipp G Maass; Jutta Wirth; Atakan Aydin; Andreas Rump; Sigmar Stricker; Sigrid Tinschert; Miguel Otero; Kaneyuki Tsuchimochi; Mary B Goldring; Friedrich C Luft; Sylvia Bähring
Journal:  Hum Mol Genet       Date:  2009-12-16       Impact factor: 6.150

Review 9.  Deconstructing repression: evolving models of co-repressor action.

Authors:  Valentina Perissi; Kristen Jepsen; Christopher K Glass; Michael G Rosenfeld
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10.  Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog ( Shh).

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Journal:  Mamm Genome       Date:  2004-01       Impact factor: 2.957

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  38 in total

1.  Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants.

Authors:  Evgeny Z Kvon; Yiwen Zhu; Guy Kelman; Catherine S Novak; Ingrid Plajzer-Frick; Momoe Kato; Tyler H Garvin; Quan Pham; Anne N Harrington; Riana D Hunter; Janeth Godoy; Eman M Meky; Jennifer A Akiyama; Veena Afzal; Stella Tran; Fabienne Escande; Brigitte Gilbert-Dussardier; Nolwenn Jean-Marçais; Sanjarbek Hudaiberdiev; Ivan Ovcharenko; Matthew B Dobbs; Christina A Gurnett; Sylvie Manouvrier-Hanu; Florence Petit; Axel Visel; Diane E Dickel; Len A Pennacchio
Journal:  Cell       Date:  2020-03-12       Impact factor: 41.582

2.  Predicting the effects of SNPs on transcription factor binding affinity.

Authors:  Sierra S Nishizaki; Natalie Ng; Shengcheng Dong; Robert S Porter; Cody Morterud; Colten Williams; Courtney Asman; Jessica A Switzenberg; Alan P Boyle
Journal:  Bioinformatics       Date:  2020-01-15       Impact factor: 6.937

3.  Holt-Oram syndrome: clinical and molecular description of 78 patients with TBX5 variants.

Authors:  Clémence Vanlerberghe; Anne-Sophie Jourdain; Jamal Ghoumid; Frédéric Frenois; Aurélie Mezel; Guy Vaksmann; Bruno Lenne; Bruno Delobel; Nicole Porchet; Valérie Cormier-Daire; Thomas Smol; Fabienne Escande; Sylvie Manouvrier-Hanu; Florence Petit
Journal:  Eur J Hum Genet       Date:  2018-12-14       Impact factor: 4.246

Review 4.  Limb development: a paradigm of gene regulation.

Authors:  Florence Petit; Karen E Sears; Nadav Ahituv
Journal:  Nat Rev Genet       Date:  2017-02-06       Impact factor: 53.242

5.  Identification of biologically relevant enhancers in human erythroid cells.

Authors:  Mack Y Su; Laurie A Steiner; Hannah Bogardus; Tejaswini Mishra; Vincent P Schulz; Ross C Hardison; Patrick G Gallagher
Journal:  J Biol Chem       Date:  2013-01-22       Impact factor: 5.157

6.  The disruption of a novel limb cis-regulatory element of SHH is associated with autosomal dominant preaxial polydactyly-hypertrichosis.

Authors:  Florence Petit; Anne-Sophie Jourdain; Muriel Holder-Espinasse; Boris Keren; Joris Andrieux; Martine Duterque-Coquillaud; Nicole Porchet; Sylvie Manouvrier-Hanu; Fabienne Escande
Journal:  Eur J Hum Genet       Date:  2015-03-18       Impact factor: 4.246

7.  Variant Interpretation: Functional Assays to the Rescue.

Authors:  Lea M Starita; Nadav Ahituv; Maitreya J Dunham; Jacob O Kitzman; Frederick P Roth; Georg Seelig; Jay Shendure; Douglas M Fowler
Journal:  Am J Hum Genet       Date:  2017-09-07       Impact factor: 11.025

8.  A novel ZRS mutation leads to preaxial polydactyly type 2 in a heterozygous form and Werner mesomelic syndrome in a homozygous form.

Authors:  Julia E VanderMeer; Reymundo Lozano; Miao Sun; Yuan Xue; Donna Daentl; Ethylin Wang Jabs; William R Wilcox; Nadav Ahituv
Journal:  Hum Mutat       Date:  2014-06-03       Impact factor: 4.878

9.  Currarino Syndrome and HPE Microform Associated with a 2.7-Mb Deletion in 7q36.3 Excluding SHH Gene.

Authors:  C Coutton; B Poreau; F Devillard; C Durand; S Odent; C Rozel; G Vieville; F Amblard; P-S Jouk; V Satre
Journal:  Mol Syndromol       Date:  2013-10-02

10.  Functional characterization of tissue-specific enhancers in the DLX5/6 locus.

Authors:  Ramon Y Birnbaum; David B Everman; Karl K Murphy; Fiorella Gurrieri; Charles E Schwartz; Nadav Ahituv
Journal:  Hum Mol Genet       Date:  2012-08-21       Impact factor: 6.150

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