Literature DB >> 33006092

Optimized selection of slow-relaxing 13C transitions in methyl groups of proteins: application to relaxation dispersion.

Vitali Tugarinov1, Theodoros K Karamanos2, G Marius Clore3.   

Abstract

Optimized selection of the slow-relaxing components of single-quantum 13C magnetization in 13CH3 methyl groups of proteins using acute (< 90°) angle 1H radio-frequency pulses, is described. The optimal selection scheme is more relaxation-tolerant and provides sensitivity gains in comparison to the experiment where the undesired (fast-relaxing) components of 13C magnetization are simply 'filtered-out' and only 90° 1H pulses are employed for magnetization transfer to and from 13C nuclei. When applied to methyl 13C single-quantum Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion experiments for studies of chemical exchange, the selection of the slow-relaxing 13C transitions results in a significant decrease in intrinsic (exchange-free) transverse spin relaxation rates of all exchanging species. For exchanging systems involving high-molecular-weight species, the lower transverse relaxation rates translate into an increase in the information content of the resulting relaxation dispersion profiles.

Entities:  

Keywords:  13CH3 spin-system; Acute angle RF pulses; Methyl 13C CPMG relaxation dispersion; Methyl NMR

Mesh:

Substances:

Year:  2020        PMID: 33006092      PMCID: PMC7704780          DOI: 10.1007/s10858-020-00349-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  15 in total

Review 1.  Nuclear magnetic resonance spectroscopy of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Peter M Hwang; Lewis E Kay
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

2.  Separating degenerate (1)H transitions in methyl group probes for single-quantum (1)H-CPMG relaxation dispersion NMR spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2007-07-12       Impact factor: 15.419

3.  Probing dynamic conformations of the high-molecular-weight αB-crystallin heat shock protein ensemble by NMR spectroscopy.

Authors:  Andrew J Baldwin; Patrick Walsh; D Flemming Hansen; Gillian R Hilton; Justin L P Benesch; Simon Sharpe; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2012-09-07       Impact factor: 15.419

4.  Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments.

Authors:  Francesca Massi; Michael J Grey; Arthur G Palmer
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

Review 5.  Bringing dynamic molecular machines into focus by methyl-TROSY NMR.

Authors:  Rina Rosenzweig; Lewis E Kay
Journal:  Annu Rev Biochem       Date:  2014       Impact factor: 23.643

6.  Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis.

Authors:  Theodoros K Karamanos; Vitali Tugarinov; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

Review 7.  Methyl TROSY spectroscopy: A versatile NMR approach to study challenging biological systems.

Authors:  Stefan Schütz; Remco Sprangers
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2019-09-30       Impact factor: 9.795

8.  Measurement of dipolar couplings for methylene and methyl sites in weakly oriented macromolecules and their use in structure determination.

Authors:  M Ottiger; F Delaglio; J L Marquardt; N Tjandra; A Bax
Journal:  J Magn Reson       Date:  1998-10       Impact factor: 2.229

9.  A single-quantum methyl 13C-relaxation dispersion experiment with improved sensitivity.

Authors:  Patrik Lundström; Pramodh Vallurupalli; Tomasz L Religa; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2007-04-27       Impact factor: 2.582

10.  Optimized NMR Experiments for the Isolation of I=1/2 Manifold Transitions in Methyl Groups of Proteins.

Authors:  Vitali Tugarinov; Theodoros K Karamanos; Alberto Ceccon; G Marius Clore
Journal:  Chemphyschem       Date:  2019-12-05       Impact factor: 3.520

View more
  3 in total

1.  Probing Side-Chain Dynamics in Proteins by NMR Relaxation of Isolated 13C Magnetization Modes in 13CH3 Methyl Groups.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  J Phys Chem B       Date:  2021-03-26       Impact factor: 2.991

Review 2.  Large Chaperone Complexes Through the Lens of Nuclear Magnetic Resonance Spectroscopy.

Authors:  Theodoros K Karamanos; G Marius Clore
Journal:  Annu Rev Biophys       Date:  2022-01-19       Impact factor: 19.763

3.  The measurement of relaxation rates of degenerate 1H transitions in methyl groups of proteins using acute angle radiofrequency pulses.

Authors:  V Tugarinov; G M Clore
Journal:  J Magn Reson       Date:  2021-07-14       Impact factor: 2.734

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.