Literature DB >> 32130959

Methyl TROSY spectroscopy: A versatile NMR approach to study challenging biological systems.

Stefan Schütz1, Remco Sprangers2.   

Abstract

A major goal in structural biology is to unravel how molecular machines function in detail. To that end, solution-state NMR spectroscopy is ideally suited as it is able to study biological assemblies in a near natural environment. Based on methyl TROSY methods, it is now possible to record high-quality data on complexes that are far over 100 kDa in molecular weight. In this review, we discuss the theoretical background of methyl TROSY spectroscopy, the information that can be extracted from methyl TROSY spectra and approaches that can be used to assign methyl resonances in large complexes. In addition, we touch upon insights that have been obtained for a number of challenging biological systems, including the 20S proteasome, the RNA exosome, molecular chaperones and G-protein-coupled receptors. We anticipate that methyl TROSY methods will be increasingly important in modern structural biology approaches, where information regarding static structures is complemented with insights into conformational changes and dynamic intermolecular interactions.
Copyright © 2019 The Author(s). Published by Elsevier B.V. All rights reserved.

Keywords:  Dynamics; Interactions; Isotope labeling; Large protein complex; Methyl groups; TROSY

Year:  2019        PMID: 32130959     DOI: 10.1016/j.pnmrs.2019.09.004

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  27 in total

1.  An allosteric switch regulates Mycobacterium tuberculosis ClpP1P2 protease function as established by cryo-EM and methyl-TROSY NMR.

Authors:  Siavash Vahidi; Zev A Ripstein; Jordan B Juravsky; Enrico Rennella; Alfred L Goldberg; Anthony K Mittermaier; John L Rubinstein; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

2.  Progress toward automated methyl assignments for methyl-TROSY applications.

Authors:  Mary C Clay; Tamjeed Saleh; Samuel Kamatham; Paolo Rossi; Charalampos G Kalodimos
Journal:  Structure       Date:  2021-12-15       Impact factor: 5.006

3.  nightshift: A Python program for plotting simulated NMR spectra from assigned chemical shifts from the Biological Magnetic Resonance Data Bank.

Authors:  Ian J Fucci; R Andrew Byrd
Journal:  Protein Sci       Date:  2021-09-22       Impact factor: 6.993

4.  Distinct dissociation rates of murine and human norovirus P-domain dimers suggest a role of dimer stability in virus-host interactions.

Authors:  Robert Creutznacher; Thorben Maass; Jasmin Dülfer; Clara Feldmann; Veronika Hartmann; Miranda Sophie Lane; Jan Knickmann; Leon Torben Westermann; Lars Thiede; Thomas J Smith; Charlotte Uetrecht; Alvaro Mallagaray; Christopher A Waudby; Stefan Taube; Thomas Peters
Journal:  Commun Biol       Date:  2022-06-09

5.  Optimized selection of slow-relaxing 13C transitions in methyl groups of proteins: application to relaxation dispersion.

Authors:  Vitali Tugarinov; Theodoros K Karamanos; G Marius Clore
Journal:  J Biomol NMR       Date:  2020-10-01       Impact factor: 2.835

6.  Probing Side-Chain Dynamics in Proteins by NMR Relaxation of Isolated 13C Magnetization Modes in 13CH3 Methyl Groups.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  J Phys Chem B       Date:  2021-03-26       Impact factor: 2.991

7.  A simple and cost-effective protocol for high-yield expression of deuterated and selectively isoleucine/leucine/valine methyl protonated proteins in Escherichia coli grown in shaker flasks.

Authors:  Mengli Cai; Ying Huang; John Lloyd; Robert Craigie; G Marius Clore
Journal:  J Biomol NMR       Date:  2021-02-04       Impact factor: 2.835

8.  TAPBPR promotes antigen loading on MHC-I molecules using a peptide trap.

Authors:  Andrew C McShan; Christine A Devlin; Giora I Morozov; Sarah A Overall; Danai Moschidi; Neha Akella; Erik Procko; Nikolaos G Sgourakis
Journal:  Nat Commun       Date:  2021-05-26       Impact factor: 14.919

9.  High-pressure NMR measurements provide insights into the different structural states that proteins can adopt.

Authors:  Remco Sprangers
Journal:  Biophys J       Date:  2021-01-22       Impact factor: 4.033

10.  The measurement of relaxation rates of degenerate 1H transitions in methyl groups of proteins using acute angle radiofrequency pulses.

Authors:  V Tugarinov; G M Clore
Journal:  J Magn Reson       Date:  2021-07-14       Impact factor: 2.734

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