Literature DB >> 17464570

A single-quantum methyl 13C-relaxation dispersion experiment with improved sensitivity.

Patrik Lundström1, Pramodh Vallurupalli, Tomasz L Religa, Frederick W Dahlquist, Lewis E Kay.   

Abstract

A pulse sequence is described for recording single-quantum (13)C-methyl relaxation dispersion profiles of (13)C-selectively labeled methyl groups in proteins that offers significant improvements in sensitivity relative to existing approaches where initial magnetization derives from (13)C polarization. Sensitivity gains in the new experiment are achieved by making use of polarization from (1)H spins and (1)H --> (13)C --> (1)H type magnetization transfers. Its utility has been established by applications involving three different protein systems ranging in molecular weight from 8 to 28 kDa, produced using a number of different selective labeling approaches. In all cases exchange parameters from both (13)C-->(1)H and (1)H --> (13)C --> (1)H classes of experiment are in good agreement, with gains in sensitivity of between 1.7 and 4-fold realized using the new scheme.

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Year:  2007        PMID: 17464570     DOI: 10.1007/s10858-007-9149-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.582


  25 in total

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Authors:  M Tollinger; N R Skrynnikov; F A Mulder; J D Forman-Kay; L E Kay
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2.  Measurement of slow (micros-ms) time scale dynamics in protein side chains by (15)N relaxation dispersion NMR spectroscopy: application to Asn and Gln residues in a cavity mutant of T4 lysozyme.

Authors:  F A Mulder; N R Skrynnikov; B Hon; F W Dahlquist; L E Kay
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

3.  Slow internal dynamics in proteins: application of NMR relaxation dispersion spectroscopy to methyl groups in a cavity mutant of T4 lysozyme.

Authors:  Frans A A Mulder; Bin Hon; Anthony Mittermaier; Frederick W Dahlquist; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-02-20       Impact factor: 15.419

4.  Protein conformational dynamics probed by single-molecule electron transfer.

Authors:  Haw Yang; Guobin Luo; Pallop Karnchanaphanurach; Tai-Man Louie; Ivan Rech; Sergio Cova; Luying Xun; X Sunney Xie
Journal:  Science       Date:  2003-10-10       Impact factor: 47.728

5.  Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR.

Authors:  Dmitry M Korzhnev; Xavier Salvatella; Michele Vendruscolo; Ariel A Di Nardo; Alan R Davidson; Christopher M Dobson; Lewis E Kay
Journal:  Nature       Date:  2004-07-29       Impact factor: 49.962

6.  Quantitative dynamics and binding studies of the 20S proteasome by NMR.

Authors:  Remco Sprangers; Lewis E Kay
Journal:  Nature       Date:  2007-01-21       Impact factor: 49.962

7.  Access of ligands to cavities within the core of a protein is rapid.

Authors:  V A Feher; E P Baldwin; F W Dahlquist
Journal:  Nat Struct Biol       Date:  1996-06

8.  Complementarity of ensemble and single-molecule measures of protein motion: a relaxation dispersion NMR study of an enzyme complex.

Authors:  Pramodh Vallurupalli; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-31       Impact factor: 11.205

9.  Flexibility of DNA binding domain of trp repressor required for recognition of different operator sequences.

Authors:  M R Gryk; O Jardetzky; L S Klig; C Yanofsky
Journal:  Protein Sci       Date:  1996-06       Impact factor: 6.725

10.  Intrinsic dynamics of an enzyme underlies catalysis.

Authors:  Elan Z Eisenmesser; Oscar Millet; Wladimir Labeikovsky; Dmitry M Korzhnev; Magnus Wolf-Watz; Daryl A Bosco; Jack J Skalicky; Lewis E Kay; Dorothee Kern
Journal:  Nature       Date:  2005-11-03       Impact factor: 49.962

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  58 in total

1.  Protein conformational exchange measured by 1H R1ρ relaxation dispersion of methyl groups.

Authors:  Ulrich Weininger; Annica T Blissing; Janosch Hennig; Alexandra Ahlner; Zhihong Liu; Hans J Vogel; Mikael Akke; Patrik Lundström
Journal:  J Biomol NMR       Date:  2013-08-02       Impact factor: 2.835

2.  Toward flexibility-activity relationships by NMR spectroscopy: dynamics of Pin1 ligands.

Authors:  Andrew T Namanja; Xiaodong J Wang; Bailing Xu; Ana Y Mercedes-Camacho; Brian D Wilson; Kimberly A Wilson; Felicia A Etzkorn; Jeffrey W Peng
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

3.  Measurement of signs of chemical shift differences between ground and excited protein states: a comparison between H(S/M)QC and R1rho methods.

Authors:  Renate Auer; D Flemming Hansen; Philipp Neudecker; Dmitry M Korzhnev; D Ranjith Muhandiram; Robert Konrat; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-12-22       Impact factor: 2.835

4.  Quantifying millisecond time-scale exchange in proteins by CPMG relaxation dispersion NMR spectroscopy of side-chain carbonyl groups.

Authors:  Alexandar L Hansen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2011-06-18       Impact factor: 2.835

Review 5.  Exploring sparsely populated states of macromolecules by diamagnetic and paramagnetic NMR relaxation.

Authors:  G Marius Clore
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

6.  Intrinsic unfoldase/foldase activity of the chaperonin GroEL directly demonstrated using multinuclear relaxation-based NMR.

Authors:  David S Libich; Vitali Tugarinov; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

7.  Active Site Breathing of Human Alkbh5 Revealed by Solution NMR and Accelerated Molecular Dynamics.

Authors:  Jeffrey A Purslow; Trang T Nguyen; Timothy K Egner; Rochelle R Dotas; Balabhadra Khatiwada; Vincenzo Venditti
Journal:  Biophys J       Date:  2018-10-11       Impact factor: 4.033

8.  Measuring 13Cbeta chemical shifts of invisible excited states in proteins by relaxation dispersion NMR spectroscopy.

Authors:  Patrik Lundström; Hong Lin; Lewis E Kay
Journal:  J Biomol NMR       Date:  2009-05-16       Impact factor: 2.835

9.  (13)C-NMR studies on disulfide bond isomerization in bovine pancreatic trypsin inhibitor (BPTI).

Authors:  Mitsuhiro Takeda; Yohei Miyanoiri; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2016-08-26       Impact factor: 2.835

10.  Solution NMR and computational methods for understanding protein allostery.

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Journal:  J Phys Chem B       Date:  2013-03-12       Impact factor: 2.991

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