Literature DB >> 9761712

Measurement of dipolar couplings for methylene and methyl sites in weakly oriented macromolecules and their use in structure determination.

M Ottiger1, F Delaglio, J L Marquardt, N Tjandra, A Bax.   

Abstract

A simple and effective method is described for simultaneously measuring dipolar couplings for methine, methylene, and methyl groups in weakly oriented macromolecules. The method is a J-modulated 3D version of the well-known [1H-13C] CT-HSQC experiment, from which the J and dipolar information are most accurately extracted by using time-domain fitting in the third, constant-time dimension. For CH2-sites, the method generally yields only the sum of the two individual 13C-1H couplings. Structure calculations are carried out by minimizing the deviation between the measured sum, and the sum predicted for each methylene on the basis of the structure. For rapidly spinning methyl groups the dipolar contribution to the splitting of the outer 13C quartet components can be used directly to constrain the orientation of the C-CH3 bond. Measured sidechain dipolar couplings are in good agreement with an ensemble of NMR structures calculated without use of these couplings. Copyright 1998 Academic Press.

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Year:  1998        PMID: 9761712     DOI: 10.1006/jmre.1998.1546

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  42 in total

1.  Assessment of zinc finger orientations by residual dipolar coupling constants.

Authors:  V Tsui; L Zhu; T H Huang; P E Wright; D A Case
Journal:  J Biomol NMR       Date:  2000-01       Impact factor: 2.835

2.  A new approach for applying residual dipolar couplings as restraints in structure elucidation.

Authors:  J Meiler; N Blomberg; M Nilges; C Griesinger
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

3.  Simple multidimensional NMR experiments to obtain different types of one-bond dipolar couplings simultaneously.

Authors:  E de Alba; M Suzuki; N Tjandra
Journal:  J Biomol NMR       Date:  2001-01       Impact factor: 2.835

4.  A new method for the simultaneous measurement of magnitude and sign of 1DCH and 1DHH dipolar couplings in methylene groups.

Authors:  T Carlomagno; W Peti; C Griesinger
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

5.  An easy way to include weak alignment constraints into NMR structure calculations.

Authors:  H J Sass; G Musco; S J Stahl; P T Wingfield; S Grzesiek
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

6.  Simultaneous measurement of ¹H-¹⁵N and methyl ¹Hm-¹³Cm residual dipolar couplings in large proteins.

Authors:  Xinli Liao; Raquel Godoy-Ruiz; Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

7.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

8.  Estimating the accuracy of protein structures using residual dipolar couplings.

Authors:  Katya Simon; Jun Xu; Chinpal Kim; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

9.  Measurement of eight scalar and dipolar couplings for methine-methylene pairs in proteins and nucleic acids.

Authors:  Emeric Miclet; Jérôme Boisbouvier; Ad Bax
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

10.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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