Literature DB >> 24905784

Bringing dynamic molecular machines into focus by methyl-TROSY NMR.

Rina Rosenzweig1, Lewis E Kay.   

Abstract

Large macromolecular assemblies, so-called molecular machines, are critical to ensuring proper cellular function. Understanding how proper function is achieved at the atomic level is crucial to advancing multiple avenues of biomedical research. Biophysical studies often include X-ray diffraction and cryo-electron microscopy, providing detailed structural descriptions of these machines. However, their inherent flexibility has complicated an understanding of the relation between structure and function. Solution NMR spectroscopy is well suited to the study of such dynamic complexes, and continued developments have increased size boundaries; insights into function have been obtained for complexes with masses as large as 1 MDa. We highlight methyl-TROSY (transverse relaxation optimized spectroscopy) NMR, which enables the study of such large systems, and include examples of applications to several cellular machines. We show how this emerging technique contributes to an understanding of cellular function and the role of molecular plasticity in regulating an array of biochemical activities.

Keywords:  allostery; deuteration; high–molecular weight complexes; methyl labeling; protein NMR; protein–substrate interactions

Mesh:

Substances:

Year:  2014        PMID: 24905784     DOI: 10.1146/annurev-biochem-060713-035829

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  89 in total

1.  (13)CHD2-CEST NMR spectroscopy provides an avenue for studies of conformational exchange in high molecular weight proteins.

Authors:  Enrico Rennella; Rui Huang; Algirdas Velyvis; Lewis E Kay
Journal:  J Biomol NMR       Date:  2015-08-14       Impact factor: 2.835

2.  2D (1)H(N), (15)N Correlated NMR Methods at Natural Abundance for Obtaining Structural Maps and Statistical Comparability of Monoclonal Antibodies.

Authors:  Luke W Arbogast; Robert G Brinson; Trina Formolo; J Todd Hoopes; John P Marino
Journal:  Pharm Res       Date:  2015-10-09       Impact factor: 4.200

3.  Scrambling free combinatorial labeling of alanine-β, isoleucine-δ1, leucine-proS and valine-proS methyl groups for the detection of long range NOEs.

Authors:  Rime Kerfah; Michael J Plevin; Ombeline Pessey; Olivier Hamelin; Pierre Gans; Jerome Boisbouvier
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

4.  Feasibility of trifluoromethyl TROSY NMR at high magnetic fields.

Authors:  Brittney A Klein; Brian D Sykes
Journal:  J Biomol NMR       Date:  2019-07-02       Impact factor: 2.835

5.  Distortion of histone octamer core promotes nucleosome mobilization by a chromatin remodeler.

Authors:  Kalyan K Sinha; John D Gross; Geeta J Narlikar
Journal:  Science       Date:  2017-01-20       Impact factor: 47.728

6.  Mechanistic basis for the recognition of a misfolded protein by the molecular chaperone Hsp90.

Authors:  Javier Oroz; Jin Hae Kim; Bliss J Chang; Markus Zweckstetter
Journal:  Nat Struct Mol Biol       Date:  2017-02-20       Impact factor: 15.369

7.  Remodelers tap into nucleosome plasticity.

Authors:  Hari R Singh; Magdalena Murawska; Andreas G Ladurner
Journal:  Nat Struct Mol Biol       Date:  2017-04-06       Impact factor: 15.369

Review 8.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

Review 9.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

10.  Cooperative dynamics across distinct structural elements regulate PTP1B activity.

Authors:  Kristiane R Torgeson; Michael W Clarkson; Ganesan Senthil Kumar; Rebecca Page; Wolfgang Peti
Journal:  J Biol Chem       Date:  2020-07-31       Impact factor: 5.157

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