| Literature DB >> 32987678 |
Ewa Machalska1,2, Grzegorz Zajac2, Monika Halat1,2, Aleksandra J Wierzba3, Dorota Gryko3, Malgorzata Baranska1,2.
Abstract
This work demonstrates resonance Raman optical activity (RROA) spectra of three truncated vitamin B12 derivatives modified within the nucleotide loop. Since truncated cobalamins possess sufficiently high rotational strength in the range of ROA excitation (532 nm), it was possible to record their spectra in the resonance condition. They showed several distinct spectral features allowing for the distinguishing of studied compounds, in contrast to other methods, i.e., UV-Vis absorption, electronic circular dichroism, and resonance Raman spectroscopy. The improved capacity of the RROA method is based here on the excitation of molecules via more than two electronic states, giving rise to the bisignate RROA spectrum, significantly distinct from a parent Raman spectrum. This observation is an important step in the dissemination of using RROA spectroscopy in studying the complex structure of corrinoids which may prove crucial for a better understanding of their biological role.Entities:
Keywords: ECD; chirality; cobinamide; resonance ROA; resonance Raman spectroscopy; vitamin B12
Mesh:
Substances:
Year: 2020 PMID: 32987678 PMCID: PMC7584048 DOI: 10.3390/molecules25194386
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Molecular structure of vitamin B12 and its truncated analogs: dicyanocobinamide ((CN)2Cbi) and its phosphate derivative ((CN)2Cbi-P), and cyanoaqua cobyrinic acid heptamethylester ((CN)(H2O)Cby(OMe)7).
Figure 2Experimental UV-Vis and ECD spectra of vitamin B12 and its truncated analogs. The green dotted line indicates the excitation wavelength of the ROA laser.
Assignments of the most characteristic Raman and ROA bands of vitamin B12 ((CN)Cbl) [41].
| Raman/cm−1 | ROA/cm−1 | Assignments |
|---|---|---|
| 1602 | - | C=C str (14-15), C=N str (16-24) |
| 1577 | 1578 (+) | C=C str (5-6; 10-11), C-H bend (10), C=N str (16-24; 4-21) |
| 1543 | 1546 (+) | C=C str (5-6; 10-11; 14-15), C=N str (9-22; 11-23; 16-24; 4-21) |
| 1501 | 1501 (+) | C=C str (5-6; 9-10; 14-15), C=N str (4-21; 11-23; 16-24; B2-B1; B2-B3), C-H bend (10; B2), CH3 bend asym, CH2 bend (scissoring) |
| 1350 | 1344 (+) | CH2 wagg, CH bend |
| 1228 | 1228 (+) | CH2 wagg, CH bend, NH bend, CH3 rock |
| 1205 | 1205 (+) | C-C str (corrin ring), CH2 twist, CH bend, CH3 rock |
| 1168 | 1168 (+) | C-N str (6-22; 14-23), C-C str (corrin ring), CH2 twist, CH bend, CH3 rock |
| 1105s | 1109 (−) | C-N str (6-22; 14-23), NH2 rock, CH2 twist, CH bend |
| 890 | 895s (+) | CH3 and CH2 rock, C-C str (7-37; 37-38; 8-9;6-7; 8-41; 9-10; 12-46), Co-N str (22; 23), C-C str (1-2; 1-19; 1-20; 3-4; 4-5; 5-35; 6-7; 7-8; 7-36; 31-32), C-N str (1-21) |
| 732 | 732 (+) | CH3 and CH2 rock, corrin ring tors and bend, NH2 twist, CCC bend, CC, CN tors, benzimidazole C-C str |
| 696 | 695 (−) | CH2 rock, NH2 twist, corrin ring tors and bend, CCC bend, CC, CN tors |
| 636 | 635 (+) | NH2 twist, corrin ring tors and bend |
| 584 | 585 (+) | NH2 twist |
| 518 | 518 (+) | corrin ring tors and bend, NH2 twist, CCC bend, CC, CN tors |
| 496 | 497 (−) | Co-C≡N bend, C≡N twist, corrin ring tors and bend, benzimidazole ring breathing, Co-N bend (B3), O-H bend (7R) |
| 427 | 429 (+) | Co-C≡N bend, corrin ring tors and bend, CCN, CNC bend, CC, CN tors, C≡N twist, O-H bend (7R) |
Abbreviations: str—stretching; bend—bending; sym—symmetric; asym—asymmetric; wagg—wagging; twist—twisting; rock—rocking; tors—torsion; s—shoulder, (+) and (–)—positive and negative ROA intensities, numbers in brackets denote atoms involved in vibrations accordingly to the Figure 1 numeration.
Figure 3Experimental Raman and RROA spectra of vitamin B12 and its truncated analogs.
Figure 4Detailed comparison of Raman and ROA spectra of vitamin B12 and its truncated analogs in the 900 to 350 cm−1 spectral region.