Literature DB >> 16834388

Spectroscopic and computational studies of Co1+cobalamin: spectral and electronic properties of the "superreduced" B12 cofactor.

Mathew D Liptak1, Thomas C Brunold.   

Abstract

The 4-coordinate, low-spin cob(I)alamin (Co1+Cbl) species, which can be obtained by heterolytic cleavage of the Co-C bond in methylcobalamin or the two-electron reduction of vitamin B12, is one of the most powerful nucleophiles known to date. The supernucleophilicity of Co1+Cbl has been harnessed by a number of cobalamin-dependent enzymes, such as the B12-dependent methionine synthase, and by enzymes involved in the biosynthesis of B12, including the human adenosyltransferase. The nontoxic nature of the Co1+Cbl supernucleophile also makes it an attractive target for the in situ bioremediation of halogenated waste. To gain insight into the geometric, electronic, and vibrational properties of this highly reactive species, electronic absorption, circular dichroism (CD), magnetic CD, and resonance Raman (rR) spectroscopies have been employed in conjunction with density functional theory (DFT), time-dependent DFT, and combined quantum mechanics/molecular mechanics computations. Collectively, our results indicate that the supernucleophilicity of Co1+Cbl can be attributed to the large destabilization of the Co 3dz2-based HOMO and its favorable orientation with respect to the corrin macrocycle, which minimizes steric repulsion during nucleophilic attack. An intense feature in the CD spectrum and a prominent peak in the rR spectra of Co1+Cbl have been identified that may serve as excellent probes of the nucleophilic character, and thus the reactivity, of Co1+Cbl in altered environments, including enzyme active sites. The implications of our results with respect to the enzymatic formation and reactivity of Co1+Cbl are discussed, and spectroscopic trends along the series from Co3+Cbls to Co2+Cbl and Co1+Cbl are explored.

Entities:  

Year:  2006        PMID: 16834388     DOI: 10.1021/ja061433q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Kinetics and mechanism of oxidation of super-reduced cobalamin and cobinamide species by thiosulfate, sulfite and dithionite.

Authors:  Ilia A Dereven'kov; Denis S Salnikov; Sergei V Makarov; Gerry R Boss; Oskar I Koifman
Journal:  Dalton Trans       Date:  2013-11-21       Impact factor: 4.390

2.  Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein.

Authors:  Sandra E Hennig; Jae-Hun Jeoung; Sebastian Goetzl; Holger Dobbek
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

3.  Theoretical analysis of C-F bond cleavage mediated by cob[I]alamin-based structures.

Authors:  D Cortés-Arriagada; A Toro-Labbe; J R Mora; L Rincón; R Mereau; F J Torres
Journal:  J Mol Model       Date:  2017-08-17       Impact factor: 1.810

4.  Co+-H interaction inspired alternate coordination geometries of biologically important cob(I)alamin: possible structural and mechanistic consequences for methyltransferases.

Authors:  Manoj Kumar; Hajime Hirao; Pawel M Kozlowski
Journal:  J Biol Inorg Chem       Date:  2012-08-08       Impact factor: 3.358

5.  Combined spectroscopic/computational studies of vitamin B12 precursors: geometric and electronic structures of cobinamides.

Authors:  Amanda J Reig; Karen S Conrad; Thomas C Brunold
Journal:  Inorg Chem       Date:  2012-02-14       Impact factor: 5.165

6.  Spectroscopic Study of the EutT Adenosyltransferase from Listeria monocytogenes: Evidence for the Formation of a Four-Coordinate Cob(II)alamin Intermediate.

Authors:  Nuru G Stracey; Flavia G Costa; Jorge C Escalante-Semerena; Thomas C Brunold
Journal:  Biochemistry       Date:  2018-08-16       Impact factor: 3.162

7.  Spectroscopic and computational characterization of the base-off forms of cob(II)alamin.

Authors:  Matthew D Liptak; Angela S Fleischhacker; Rowena G Matthews; Joshua Telser; Thomas C Brunold
Journal:  J Phys Chem B       Date:  2009-04-16       Impact factor: 2.991

Review 8.  Cobalamin-dependent and cobamide-dependent methyltransferases.

Authors:  Rowena G Matthews; Markos Koutmos; Supratim Datta
Journal:  Curr Opin Struct Biol       Date:  2008-12       Impact factor: 6.809

9.  Probing the role of the histidine 759 ligand in cobalamin-dependent methionine synthase.

Authors:  Matthew D Liptak; Angela S Fleischhacker; Rowena G Matthews; Thomas C Brunold
Journal:  Biochemistry       Date:  2007-06-13       Impact factor: 3.162

10.  Spectroscopic Studies of the EutT Adenosyltransferase from Salmonella enterica: Mechanism of Four-Coordinate Co(II)Cbl Formation.

Authors:  Ivan G Pallares; Theodore C Moore; Jorge C Escalante-Semerena; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2016-03-09       Impact factor: 15.419

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