Literature DB >> 12733931

Spectroscopic and computational studies of Co3+-corrinoids: spectral and electronic properties of the B12 cofactors and biologically relevant precursors.

Troy A Stich1, Amanda J Brooks, Nicole R Buan, Thomas C Brunold.   

Abstract

The B(12) cofactors methylcobalamin (MeCbl) and 5'-deoxyadenosylcobalamin (AdoCbl) have long fascinated chemists because of their complex structures and unusual reactivities in biological systems; however, their electronic absorption (Abs) spectra have remained largely unassigned. In this study, we have used Abs, circular dichroism (CD), magnetic CD (MCD), and resonance Raman spectroscopic techniques to probe the electronic excited states of Co(3+)Cbl species that differ with respect to their upper axial ligand, including MeCbl, AdoCbl, aquacobalamin (H(2)OCbl(+)), and vitamin B(12) (cyanocobalamin, CNCbl). Also included to probe the effect of the lower axial ligand on the electronic properties of Cbls is Ado-cobinamide (AdoCbi(+)), an AdoCbl derivative that lacks the tethered base 5,6-dimethylbenzimidazole (DMB) and instead binds a water molecule in the lower axial position. Spectroscopic data for each species are analyzed within the framework of time-dependent density functional theory (TD-DFT) to assign the major spectral features (the so-called alpha/beta, D/E, and gamma bands) and to generate experimentally validated electronic-structure descriptions. These studies reveal that the "unique" Abs spectra of MeCbl and AdoCbl, which differ considerably from the "typical" Abs spectra of H(2)OCbl(+) and CNCbl, reflect the high degree of sigma-donation from the alkyl ligand to the Co center and the consequent destabilization of all Co 3d orbitals. They reveal further that with increasing sigma-donor strength of the upper axial ligand, the contribution from the formally unoccupied Co 3d(z(2)) orbital to the HOMO increases, which induces a strong Co[bond]N(DMB) sigma-antibonding interaction, consistent with the experimentally observed lengthening of this bond from H(2)OCbl(+) to CNCbl and MeCbl. Alternatively, our spectroscopic and computational data for MeCbl and MeCbi(+) reveal that substitution of the DMB by a water molecule in the lower axial position has negligible effects on the Co[bond]C. A simple model is presented that explains why the identity of the upper axial ligand has a major effect on the Co[bond]N(ax) strength, whereas the lower axial ligand does not appreciably modulate the nature of the Co[bond]C. Implications of these results with respect to enzymatic Co[bond]C activation are discussed.

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Year:  2003        PMID: 12733931     DOI: 10.1021/ja029328d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  Computational study on the difference between the Co-C bond dissociation energy in methylcobalamin and adenosylcobalamin.

Authors:  Nicole Dölker; Antonio Morreale; Feliu Maseras
Journal:  J Biol Inorg Chem       Date:  2005-09-23       Impact factor: 3.358

2.  DFT analysis of co-alkyl and co-adenosyl vibrational modes in B12-cofactors.

Authors:  Pawel M Kozlowski; Tadeusz Andruniow; Andrzej A Jarzecki; Marek Z Zgierski; Thomas G Spiro
Journal:  Inorg Chem       Date:  2006-07-10       Impact factor: 5.165

3.  Structural insights into the mechanism of four-coordinate Cob(II)alamin formation in the active site of the Salmonella enterica ATP:Co(I)rrinoid adenosyltransferase enzyme: critical role of residues Phe91 and Trp93.

Authors:  Theodore C Moore; Sean A Newmister; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Biochemistry       Date:  2012-11-21       Impact factor: 3.162

4.  Combined spectroscopic/computational studies of vitamin B12 precursors: geometric and electronic structures of cobinamides.

Authors:  Amanda J Reig; Karen S Conrad; Thomas C Brunold
Journal:  Inorg Chem       Date:  2012-02-14       Impact factor: 5.165

5.  Spectroscopic studies of the corrinoid/iron-sulfur protein from Moorella thermoacetica.

Authors:  Troy A Stich; Javier Seravalli; Swarnalatha Venkateshrao; Thomas G Spiro; Stephen W Ragsdale; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2006-04-19       Impact factor: 15.419

6.  Spectroscopic and computational characterization of the nickel-containing F430 cofactor of methyl-coenzyme M reductase.

Authors:  Jennifer L Craft; Yih-Chern Horng; Stephen W Ragsdale; Thomas C Brunold
Journal:  J Biol Inorg Chem       Date:  2003-12-09       Impact factor: 3.358

7.  Kinetic and spectroscopic studies of the ATP:corrinoid adenosyltransferase PduO from Lactobacillus reuteri: substrate specificity and insights into the mechanism of Co(II)corrinoid reduction.

Authors:  Kiyoung Park; Paola E Mera; Jorge C Escalante-Semerena; Thomas C Brunold
Journal:  Biochemistry       Date:  2008-08-02       Impact factor: 3.162

8.  Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B12.

Authors:  Romila Mascarenhas; Markus Ruetz; Liam McDevitt; Markos Koutmos; Ruma Banerjee
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 11.205

9.  Probing the role of the histidine 759 ligand in cobalamin-dependent methionine synthase.

Authors:  Matthew D Liptak; Angela S Fleischhacker; Rowena G Matthews; Thomas C Brunold
Journal:  Biochemistry       Date:  2007-06-13       Impact factor: 3.162

10.  Spectroscopic Studies of the EutT Adenosyltransferase from Salmonella enterica: Mechanism of Four-Coordinate Co(II)Cbl Formation.

Authors:  Ivan G Pallares; Theodore C Moore; Jorge C Escalante-Semerena; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2016-03-09       Impact factor: 15.419

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