Literature DB >> 27383231

Resonance Raman spectroscopic study of the interaction between Co(II)rrinoids and the ATP:corrinoid adenosyltransferase PduO from Lactobacillus reuteri.

Kiyoung Park1, Paola E Mera2, Jorge C Escalante-Semerena3, Thomas C Brunold4.   

Abstract

The human-type ATP:corrinoid adenosyltransferase PduO from Lactobacillus reuteri (LrPduO) catalyzes the adenosylation of Co(II)rrinoids to generate adenosylcobalamin (AdoCbl) or adenosylcobinamide (AdoCbi(+)). This process requires the formation of "supernucleophilic" Co(I)rrinoid intermediates in the enzyme active site which are properly positioned to abstract the adeonsyl moiety from co-substrate ATP. Previous magnetic circular dichroism (MCD) spectroscopic and X-ray crystallographic analyses revealed that LrPduO achieves the thermodynamically challenging reduction of Co(II)rrinoids by displacing the axial ligand with a non-coordinating phenylalanine residue to produce a four-coordinate species. However, relatively little is currently known about the interaction between the tetradentate equatorial ligand of Co(II)rrinoids (the corrin ring) and the enzyme active site. To address this issue, we have collected resonance Raman (rR) data of Co(II)rrinoids free in solution and bound to the LrPduO active site. The relevant resonance-enhanced vibrational features of the free Co(II)rrinoids are assigned on the basis of rR intensity calculations using density functional theory to establish a suitable framework for interpreting rR spectral changes that occur upon Co(II)rrinoid binding to the LrPduO/ATP complex in terms of structural perturbations of the corrin ring. To complement our rR data, we have also obtained MCD spectra of Co(II)rrinoids bound to LrPduO complexed with the ATP analogue UTP. Collectively, our results provide compelling evidence that in the LrPduO active site, the corrin ring of Co(II)rrinoids is firmly locked in place by several amino acid side chains so as to facilitate the dissociation of the axial ligand.

Entities:  

Keywords:  ATP:corrinoid adenosyltransferase; Adenosylcobalamin; Density functional theory; Resonance Raman spectroscopy

Mesh:

Substances:

Year:  2016        PMID: 27383231      PMCID: PMC5118822          DOI: 10.1007/s00775-016-1371-x

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  42 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  Spectroscopic and computational studies of cobalamin species with variable lower axial ligation: implications for the mechanism of Co-C bond activation by class I cobalamin-dependent isomerases.

Authors:  Karen S Conrad; Christopher D Jordan; Kenneth L Brown; Thomas C Brunold
Journal:  Inorg Chem       Date:  2015-04-03       Impact factor: 5.165

3.  Cloning, expression, and characterization of coenzyme-B12-dependent diol dehydratase from Lactobacillus diolivorans.

Authors:  Xuqin Wei; Xiaolei Meng; Yunlai Chen; Yutuo Wei; Liqin Du; Ribo Huang
Journal:  Biotechnol Lett       Date:  2014-01       Impact factor: 2.461

4.  Structural basis for adenosylcobalamin activation in AdoCbl-dependent ribonucleotide reductases.

Authors:  Karl-Magnus Larsson; Derek T Logan; Pär Nordlund
Journal:  ACS Chem Biol       Date:  2010-10-15       Impact factor: 5.100

5.  Spectroscopic and computational studies of the ATP:corrinoid adenosyltransferase (CobA) from Salmonella enterica: insights into the mechanism of adenosylcobalamin biosynthesis.

Authors:  Troy A Stich; Nicole R Buan; Jorge C Escalante-Semerena; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

6.  Structural and functional analyses of the human-type corrinoid adenosyltransferase (PduO) from Lactobacillus reuteri.

Authors:  Paola E Mera; Martin St Maurice; Ivan Rayment; Jorge C Escalante-Semerena
Journal:  Biochemistry       Date:  2007-11-08       Impact factor: 3.162

7.  The complete coenzyme B12 biosynthesis gene cluster of Lactobacillus reuteri CRL1098.

Authors:  Filipe Santos; Jose L Vera; René van der Heijden; Graciela Valdez; Willem M de Vos; Fernando Sesma; Jeroen Hugenholtz
Journal:  Microbiology       Date:  2008-01       Impact factor: 2.777

Review 8.  Cobalamin-dependent dehydratases and a deaminase: radical catalysis and reactivating chaperones.

Authors:  Tetsuo Toraya
Journal:  Arch Biochem Biophys       Date:  2013-11-19       Impact factor: 4.013

9.  Spectroscopic and computational studies of Co2+corrinoids: spectral and electronic properties of the biologically relevant base-on and base-off forms of Co2+cobalamin.

Authors:  Troy A Stich; Nicole R Buan; Thomas C Brunold
Journal:  J Am Chem Soc       Date:  2004-08-11       Impact factor: 15.419

10.  Biochemical Characterization of the Split Class II Ribonucleotide Reductase from Pseudomonas aeruginosa.

Authors:  Mikael Crona; Anders Hofer; Juan Astorga-Wells; Britt-Marie Sjöberg; Fredrik Tholander
Journal:  PLoS One       Date:  2015-07-30       Impact factor: 3.240

View more
  1 in total

1.  Resonance Raman Optical Activity Spectroscopy in Probing Structural Changes Invisible to Circular Dichroism Spectroscopy: A Study on Truncated Vitamin B12 Derivatives.

Authors:  Ewa Machalska; Grzegorz Zajac; Monika Halat; Aleksandra J Wierzba; Dorota Gryko; Malgorzata Baranska
Journal:  Molecules       Date:  2020-09-24       Impact factor: 4.411

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.