| Literature DB >> 32953490 |
Dong Xie1, Ting-Ting Wang2, Shu-Jung Huang3, Jia-Jun Deng1, Yi-Jiu Ren1, Yang Yang2, Jun-Qi Wu1, Lei Zhang1, Ke Fei1, Xi-Wen Sun2, Yun-Lang She1, Chang Chen1.
Abstract
BACKGROUND: Robust imaging biomarkers are needed for risk stratification in stage I lung adenocarcinoma patients in order to select optimal treatment regimen. We aimed to construct and validate a radiomics nomogram for predicting the disease-free survival (DFS) of patients with resected stage I lung adenocarcinoma, and further identifying candidates benefit from adjuvant chemotherapy (ACT).Entities:
Keywords: Radiomics; adjuvant chemotherapy (ACT); disease-free survival (DFS); gene set enrichment analysis (GSEA); lung adenocarcinoma
Year: 2020 PMID: 32953490 PMCID: PMC7481634 DOI: 10.21037/tlcr-19-577
Source DB: PubMed Journal: Transl Lung Cancer Res ISSN: 2218-6751
Radiomic nomograms for prognosis prediction of lung adenocarcinoma in the literatures
| Literature | Year | Patient | Sample size | Variates included in nomogram |
|---|---|---|---|---|
| Huang | 2016 | Early stage (I and II) NSCLC | 282 | Radiomic signature, age, clinical stage, histologic grade, gender |
| Desseroit | 2016 | Stage I–IIIb NSCLC | 116 | Overall stage, selected radiomics features (metabolic volume, PET entropy, CT zone percentage) |
| Wang | 2019 | Advanced NSCLC | 118 | Radiomics signature, age, lymph node, lymphocyte2, NLR1 |
| Yang | 2019 | Stage I–IIIb NSCLC | 371 | Radiomics signature, age, sex, T stage, N stage |
| Akinci D’Antonoli | 2020 | stage Ia–IIb NSCLC | 124 | Radiomics signature, overall stage |
Extracted radiomics features
| Intensity | Shape | Texture | ||||
|---|---|---|---|---|---|---|
| GLCM | GLRLM | GLSZM | NGTDM | GLDM | ||
| 10 Percentile | Elongation | Autocorrelation | Gray level nonuniformity | Gray level nonuniformity | Busyness | Busyness |
| 90Percentile | Flatness | Cluster Prominence | Gray level nonuniformity normalized | Gray level nonuniformity normalized | Coarseness | Coarseness |
| Energy | Least axis length | Cluster Shade | Gray level variance | Gray level variance | Complexity | Complexity |
| Entropy | Major axis length | Cluster Tendency | High gray level run emphasis | High gray level zone emphasis | Contrast | Contrast |
| Interquartile range | Maximum 2D diameter column | Contrast | Long run emphasis | Large area emphasis | Strength | Strength |
| Kurtosis | Maximum 2D diameter row | Correlation | Long run high gray level emphasis | Large area high gray level emphasis | Dependence entropy | |
| Maximum | Maximum 2D diameter slice | Difference Average | Long run low gray level emphasis | Large area low gray level emphasis | Dependence nonuniformity | |
| Mean absolute deviation | Maximum 3D diameter | Difference Entropy | Low gray level run emphasis | Low gray level zone emphasis | Dependence nonuniformity normalized | |
| Mean | Mesh volume | Difference Variance | Run entropy | Size zone nonuniformity | Dependence variance | |
| Median | Minor axis length | Id | Run length nonuniformity | Size zone nonuniformity normalized | Gray level nonuniformity | |
| Minimum | Sphericity | Idm | Run length nonuniformity normalized | Small area emphasis | Gray level variance | |
| Range | Surface area | Idmn | Run percentage | Small area high gray level emphasis | High gray level emphasis | |
| Robust mean absolute deviation | Surface volume ratio | Idn | Run variance | Small area low gray level emphasis | Large dependence emphasis | |
| Root mean squared | Voxel volume | Imc1 | Short run emphasis | Zone entropy | Large dependence high gray level emphasis | |
| Skewness | Imc2 | Short run high gray level emphasis | Zone percentage | Large dependence low gray level emphasis | ||
| Total energy | Inverse variance | Short run low gray level emphasis | Zone variance | Low gray level emphasis | ||
| Uniformity | Joint average | Small dependence emphasis | ||||
| Variance | Joint energy | Small dependence high gray level emphasis | ||||
| Joint entropy | Small dependence low gray level emphasis | |||||
| MCC | ||||||
| Maximum probability | ||||||
| Sum average | ||||||
| Sum entropy | ||||||
| Sum squares | ||||||
The baseline characteristics of 475 patients with resected stage I lung adenocarcinoma in the training and validation cohorts
| Characteristic | Training cohort, N=238, n (%) | Validation cohort, N=237, n (%) | P value |
|---|---|---|---|
| Age, years | 0.436 | ||
| <65 | 165 (69.3) | 172 (72.6) | |
| ≥65 | 73 (30.7) | 65 (27.4) | |
| Gender | 0.966 | ||
| Female | 129 (54.2) | 128 (54.0) | |
| Male | 109 (45.8) | 109 (46.0) | |
| Smoking | 0.107 | ||
| No | 164 (68.9) | 179 (75.5) | |
| Yes | 74 (31.1) | 58 (24.5) | |
| p-TNM stage | 0.383 | ||
| IA | 121 (50.8) | 111 (46.8) | |
| IB | 117 (49.2) | 126 (53.2) | |
| Surgery types | 0.396 | ||
| Lobectomy | 221 (92.9) | 215 (90.7) | |
| Sub-lobar resection | 17 (7.1) | 22 (9.3) | |
| Histologic subtype | 0.589 | ||
| LPA | 83 (34.9) | 83 (35.0) | |
| APA | 91 (38.2) | 88 (37.1) | |
| PPA | 37 (15.5) | 46 (19.4) | |
| SPA | 17 (7.1) | 15 (6.3) | |
| MPA | 10 (4.2) | 5 (2.1) | |
| Pathologic tumor size, mm, mean ± SD | 20.2±8.2 | 20.1±8.4 | 0.948 |
| Follow-up time, median | 66.3 | 64.7 | 0.054 |
SD, standard deviation; LPA, lepidic predominant adenocarcinoma; APA, acinar predominant adenocarcinoma; PPA, papillary predominant adenocarcinoma; MPA, micropapillary pattern-predominant adenocarcinoma; SPA, solid predominant adenocarcinoma.
Figure S1Radiomics feature selection using the least absolute shrinkage and selection operator (LASSO) regression model. (A) LASSO coefficient profiles of the radiomics features. As the tuning parameter (λ) increased using 5-fold cross-validation, more coefficients tended to approach 0 and the optimal non-zero coefficients generated, which yielded a set of the optimal radiomics features; (B) the partial likelihood deviance from the LASSO regression cross-validation procedure was plotted against log(λ).
Figure 1The distribution of radiomics score (left panel) and KM survival (right panel) in the training (A) and validation cohorts (B). The P values of survival curves were calculated using the log-rank test.
Figure S2Kaplan-Meier survival analysis for all 475 patients with stage I lung adenocarcinoma according to the eight-feature-based radiomics signature stratified by clinicopathological risk factors.
Figure 2Gene set expression patterns—Radiogenomics dataset. The radiomics signature was linked to gene expression patterns using a pre-ranked gene set enrichment analysis (GSEA). Positive and negative enrichments are shown in red and blue, respectively. The top 10 enrichments in each category are highlighted.
Univariate and multivariate analysis of disease-free survival for patients in training cohort
| Variables | Univariate | Multivariate | |||
|---|---|---|---|---|---|
| HR (95% CI) | P | HR (95% CI) | P | ||
| Age (≥65 | 2.506 (1.414–4.442) | 0.002 | 1.893 (1.061–3.379) | 0.031 | |
| Gender (Male | 2.120 (1.176–3.819) | 0.012 | 1.568 (0.850–2.890) | 0.150 | |
| Smoking status (Yes | 1.602 (0.894–2.871) | 0.113 | NA | NA | |
| p-TNM stage (IB | 4.243 (2.109–8.535) | <0.001 | 2.109 (1.039–4.338) | 0.043 | |
| Operation type (Lobe | 0.966 (0.300–3.115) | 0.954 | NA | NA | |
| Histologic subtype | 0.001 | 0.010 | |||
| LPA | 1.000 (Reference) | 1.000 (Reference) | |||
| APA/PPA | 4.720 (1.839–12.118) | 0.001 | 2.703 (1.039–7.035) | 0.042 | |
| MPA/SPA | 7.854 (2.682–22.998) | 0.002 | 5.300 (1.782–15.767) | 0.003 | |
| Pathologic tumor size | 1.763 (1.266–2.455) | <0.001 | 1.097 (0.779–1.545) | 0.596 | |
| Radiomics signature | 11.528 (4.890–27.178) | <0.001 | 7.794 (3.185–19.078) | <0.001 | |
HR, hazard ratio; CI, confidence interval; LPA, lepidic predominant adenocarcinoma; APA, acinar predominant adenocarcinoma; PPA, papillary predominant adenocarcinoma; MPA, micropapillary pattern-predominant adenocarcinoma; SPA, solid predominant adenocarcinoma.
Figure 3A prediction performance analysis of patients with stage I lung adenocarcinoma. (A) The nomogram for predicting 3- and 5-year DFS after surgery; (B) plots depict the calibration of the nomogram in terms of agreement between predicted and observed 3- and 5-year DFS. Performance of the validation cohort was shown on the plot relative to the 45-degree line, which represented perfect prediction; (C) decision curve analysis for the comparison of prognostic factors. The y-axis measures the net benefit.
Figure S3The Benefit Analysis of adjuvant chemotherapy (ACT) in All Patients with Stage IB Adenocarcinoma. These patients showed no survival difference between with and without ACT.
The Clinicopathological features of 243 patients with resected stage IB lung adenocarcinoma in the low- and high-risk groups defined by the radiomics nomogram
| Characteristic | Low-group, N=129, n (%) | High-group, N=114, n (%) | P value |
|---|---|---|---|
| Age, years | <0.001 | ||
| <65 | 102 (79.1) | 62 (54.4) | |
| ≥65 | 27 (20.9) | 52 (45.6) | |
| Gender | 0.004 | ||
| Female | 86 (66.7) | 55 (48.2) | |
| Male | 43 (33.3) | 59 (51.8) | |
| Smoking | 0.467 | ||
| No | 97 (75.2) | 81 (71.1) | |
| Yes | 32 (24.8) | 33 (28.9) | |
| Surgery types | 0.225 | ||
| Lobectomy | 125 (96.9) | 107 (93.9) | |
| Sub-lobar resection | 4 (3.1) | 7 (6.1) | |
| Histologic subtype | <0.001 | ||
| LPA | 55 (42.6) | 17 (14.9) | |
| APA | 48 (37.2) | 51 (44.7) | |
| PPA | 25 (19.4) | 20 (17.5) | |
| SPA | 0 (0.0) | 18 (15.8) | |
| MPA | 1 (0.8) | 8 (7.0) | |
| Pathologic tumor size, mm, mean ± SD | 21.9±7.8 | 24.8±8.9 | 0.007 |
| Radiomics signature, mean± SD | 0.789±0.336 | 1.373±0.297 | <0.001 |
SD, standard deviation; LPA, lepidic predominant adenocarcinoma; APA, acinar predominant adenocarcinoma; PPA, papillary predominant adenocarcinoma; MPA, micropapillary pattern-predominant adenocarcinoma; SPA, solid predominant adenocarcinoma.
Figure 4The Benefit analysis of adjuvant chemotherapy (ACT) in different subgroups. (A) Patients in the low-risk groups defined by the nomogram showed no survival difference between with and without ACT; (B) patients in the high-risk groups defined by the nomogram could obtain survival benefits from ACT.