| Literature DB >> 32937741 |
Sean A C McDowell1, Ruijing Wang2, Qingzhong Li2.
Abstract
The interactions in model ionic YTX3···Z (Y = NC, F, Cl, Br; X = F, Cl, Br, Z = F-, Cl-, Br-, Li+) dyads containing the tetrel atoms, T = C, Si, Ge, were studied using ab initio computational methods, including an energy decomposition analysis, which found that the YTX3 molecules were stabilized by both anions (via tetrel bonding) and cations (via polarization). For the tetrel-bonded dyads, both the electrostatic and polarization forces make comparable contributions to the binding in the C-containing dyads, whereas, electrostatic forces are by far the largest contributor to the binding in the Si- and Ge-containing analogues. Model metastable Li+···NCTCl3···F- (T = C, Si, Ge) triads were found to be lower in energy than the combined energy of the Li+ + NCTCl3 + F- fragments. The pair energies and cooperative energies for these highly polar triads were also computed and discussed.Entities:
Keywords: EDA; NBO; cooperativity; tetrel bond
Mesh:
Substances:
Year: 2020 PMID: 32937741 PMCID: PMC7570900 DOI: 10.3390/molecules25184197
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
MP2/aug-cc-pVTZ parameters for model anionic Y-TCl3···F− (Y = NC, F, Cl, Br; T = C, Si, Ge) dyads. The properties with respect to the isolated molecules are the counterpoise-corrected interaction energy (Eint in kcal/mol), intermolecular separation (R(T···F− in Å) and the bond length changes (∆R in Å). All three T-Cl bond length changes have the same value. The Y-T-Cl angle is also shown.
| Dyads |
| Δ | Δ | Δ | ∠Y-T-Cl | |
|---|---|---|---|---|---|---|
| NCCCl3···F− | −14.2 | 2.826 | 0.010 | −0.007 | 0.000 | 107.0 |
| FCCl3···F− | −9.3 | 2.894 | 0.029 | −0.010 | -- | 106.9 |
| ClCCl3···F− | −9.1 | 2.909 | 0.050 | −0.014 | -- | 107.5 |
| BrCCl3···F− | −9.5 | 2.888 | 0.055 | −0.015 | -- | 107.3 |
| NCSiCl3···F− | −128.6 | 1.652 | 0.090 | 0.102 | 0.002 | 89.2 |
| FSiCl3···F− | −118.6 | 1.656 | 0.069 | 0.110 | -- | 90.0 |
| ClSiCl3···F− | −121.2 | 1.658 | 0.182 | 0.090 | -- | 90.0 |
| BrSiCl3···F− | −124.1 | 1.656 | 0.228 | 0.082 | -- | 90.4 |
| NCGeCl3···F− | −111.8 | 1.778 | 0.096 | 0.090 | 0.002 | 90.2 |
| FGeCl3···F− | −105.9 | 1.782 | 0.073 | 0.088 | -- | 90.0 |
| ClGeCl3···F− | −107.0 | 1.782 | 0.169 | 0.077 | -- | 90.7 |
| BrGeCl3···F− | −108.7 | 1.779 | 0.201 | 0.073 | -- | 90.6 |
“--” indicate that no data is supplied for these values.
Figure 1Typical optimized structures for anionic Y-TX3···F− and cationic Y-TX3···Li+ dyads: (a) F-CCl3···F−; (b) Br-CCl3···Li+; (c) F-SiCl3···F−; (d) F-SiCl3···Li+; (e) NC-GeCl3···F−; (f) NC-GeCl3···Li+.
MP2/aug-cc-pVTZ parameters for model cationic Y-TCl3···Li+ (Y = NC, F, Cl, Br; T = C, Si, Ge) dyads. The properties with respect to the isolated molecules are the counterpoise-corrected interaction energy (Eint in kcal/mol), intermolecular separation (R (T···Li+) in Å) and the bond length changes (∆R in Å). The Y-T-Cl angle is also shown.
| Dyads |
| Δ | Δ | Δ | Δ | ∠Y-T-Cl | |
|---|---|---|---|---|---|---|---|
| NCCCl3···Li+ | −14.3 | 2.664 | −0.013 | 0.015 | 0.015 | 0.002 | 110.9 |
| FCCl3···Li+ | −17.3 | 2.637 | −0.031 | 0.017 | 0.017 | -- | 110.4 |
| ClCCl3···Li+ | −21.0 | 2.637 | −0.044 | 0.022 | 0.022 | -- | 111.7 |
| BrCCl3···Li+ | −21.8 | 2.630 | −0.044 | 0.022 | 0.022 | -- | 111.8 |
| NCSiCl3···Li+ | −21.4 | 3.138 | −0.026 | −0.037 | 0.050 | 0.002 | 114.1 |
| FSiCl3···Li+ | −24.2 | 3.119 | −0.018 | −0.040 | 0.046 | -- | 113.8 |
| ClSiCl3···Li+ | −22.3 | 3.122 | −0.036 | −0.036 | 0.053 | -- | 114.9 |
| BrSiCl3···Li+ | −18.6 | 3.120 | −0.041 | −0.034 | 0.056 | -- | 115.2 |
| NCGeCl3···Li+ | −21.7 | 3.171 | −0.026 | −0.036 | 0.052 | 0.002 | 115.5 |
| FGeCl3···Li+ | −25.4 | 3.154 | −0.019 | −0.038 | 0.048 | -- | 114.0 |
| ClGeCl3···Li+ | −24.3 | 3.157 | −0.035 | −0.035 | 0.055 | -- | 115.9 |
| BrGeCl3···Li+ | −20.7 | 3.155 | −0.089 | −0.033 | 0.058 | -- | 116.4 |
1 The change of the T-Cl bond furthest away from the Li+ atom. 2 The changes of the two T-Cl bonds closest to the Li+ atom. “--” indicate that no data is supplied for these values.
MP2/aug-cc-pVTZ energy decomposition analysis (EDA) for model anionic Y-TX3···F− (Y = NC, F, Cl, Br; T = C, Si, Ge; X = Cl) dyads.
| Dyads |
|
|
|
|
|
|---|---|---|---|---|---|
| NCCCl3···F− | −19.7 | −35.2 | 59.4 | −16.5 | −2.3 |
| FCCl3···F− | −13.2 | −30.4 | 50.8 | −14.2 | −2.4 |
| ClCCl3···F− | −11.7 | −30.8 | 51.4 | −15.1 | −3.0 |
| BrCCl3···F− | −12.0 | −31.8 | 53.1 | −15.8 | −3.1 |
| NCSiCl3···F− | −207.7 | −194.6 | 394.4 | −130.6 | 8.5 |
| FSiCl3···F− | −199.1 | −195.9 | 395.9 | −128.2 | 7.5 |
| ClSiCl3···F− | −201.1 | −196.0 | 396.2 | −128.8 | 7.4 |
| BrSiCl3···F− | −203.2 | −195.2 | 395.0 | −129.6 | 7.8 |
| NCGeCl3···F− | −191.7 | −170.8 | 350.0 | −106.5 | 7.3 |
| FGeCl3···F− | −184.9 | −167.7 | 343.4 | −103.2 | 6.8 |
| ClGeCl3···F− | −186.2 | −170.1 | 347.8 | −104.6 | 6.4 |
| BrGeCl3···F− | −188.2 | −170.9 | 349.8 | −105.8 | 6.6 |
MP2/aug-cc-pVTZ energy decomposition analysis (EDA) for model cationic Y-TX3···Li+ (Y = NC, F, Cl, Br; T = C, Si, Ge; X = Cl) dyads.
| Dyads |
|
|
|
|
|
|---|---|---|---|---|---|
| NCCCl3···Li+ | 6.4 | −2.4 | 7.4 | −23.1 | −3.1 |
| FCCl3···Li+ | 1.9 | −2.5 | 7.5 | −22.3 | −2.6 |
| ClCCl3···Li+ | −0.9 | −2.9 | 8.7 | −24.3 | −2.2 |
| BrCCl3···Li+ | −1.3 | −3.0 | 9.0 | −25.1 | −2.2 |
| NCSiCl3···Li+ | −1.4 | −3.6 | 11.0 | −23.9 | −1.2 |
| FSiCl3···Li+ | −5.4 | −3.8 | 11.5 | −23.2 | −1.1 |
| ClSiCl3···Li+ | −7.6 | −4.1 | 12.5 | −24.7 | −1.0 |
| BrSiCl3···Li+ | −1.3 | −2.6 | 7.8 | −24.6 | −2.4 |
| NCGeCl3···Li+ | −3.3 | −4.0 | 12.0 | −24.7 | −1.2 |
| FGeCl3···Li+ | −5.3 | −3.9 | 11.8 | −23.7 | −1.2 |
| ClGeCl3···Li+ | −8.5 | −4.4 | 13.1 | −25.4 | −0.9 |
| BrGeCl3···Li+ | −2.6 | −2.7 | 8.0 | −25.3 | −2.3 |
MP2/aug-cc-pVTZ parameters for model anionic NC-CX3···Z− (X = Br, Cl, F; Z = Br, Cl, F) dyads. The properties with respect to the isolated molecules are the counterpoise-corrected interaction energy (Eint in kcal/mol), intermolecular separation (R in Å) and the bond length changes (∆R in Å). All three C-X bond length changes have the same value.
| Dyads |
| ∆ | ∆ | ∆ | |
|---|---|---|---|---|---|
| NCCBr3···Br− | −9.5 | 3.756 | 0.003 | −0.004 | 0.0002 |
| NCCBr3···Cl− | −10.7 | 3.560 | 0.004 | −0.005 | 0.0002 |
| NCCBr3···F− | −17.0 | 2.762 | 0.008 | −0.008 | 0.0004 |
| NCCCl3···Br− | −8.1 | 3.809 | 0.005 | −0.004 | 0.0000 |
| NCCCl3···Cl− | −9.0 | 3.619 | 0.006 | −0.004 | 0.0000 |
| NCCCl3···F− | −14.2 | 2.826 | 0.010 | −0.007 | 0.0002 |
| NCCF3···Br− | −5.4 | 3.732 | 0.017 | −0.006 | 0.003 |
| NCCF3···Cl− | −6.2 | 3.554 | 0.019 | −0.007 | 0.001 |
| NCCF3···F− | −10.4 | 2.834 | 0.028 | −0.009 | 0.000 |
MP2/aug-cc-pVTZ parameters for model Li+···NC-TCl3···F− triads, Li+···NC-TCl3 and NC-TCl3···F− dyads (T = C, Si, Ge). The bond length changes in the triads (ΔR) are computed relative to the bond length in the isolated optimized NC-TCl3 molecule.
|
| Δ | Δ | Δ | ∠C-T-Cl | ||||
|---|---|---|---|---|---|---|---|---|
| Triads | ||||||||
| Li+···NCCCl3···F− | −112.5 | 1.858 | 2.475 | 2.673 | −0.014 | 0.017 | −0.005 | 103.7 |
| Li+···NCSiCl3···F− | −254.4 | 1.830 | 1.631 | 2.742 | 0.074 | 0.167 | −0.003 | 86.2 |
| Li+···NCGeCl3···F− | −236.3 | 1.834 | 1.755 | 2.866 | 0.059 | 0.206 | −0.002 | 86.6 |
| Dyads | ||||||||
| Li+···NCCCl3 | −33.9 | 1.943 | -- | -- | −0.009 | 0.011 | −0.007 | 107.5 |
| Li+···NCSiCl3 | −38.1 | 1.936 | -- | -- | −0.017 | 0.059 | −0.007 | 105.2 |
| Li+···NCGeCl3 | −37.3 | 1.939 | -- | -- | −0.016 | 0.063 | −0.007 | 105.3 |
| NCCCl3···F− | −14.2 | -- | 2.826 | 2.860 | −0.007 | 0.010 | 0.000 | 107.0 |
| NCSiCl3···F− | −128.6 | -- | 1.652 | 2.709 | 0.102 | 0.090 | 0.002 | 89.2 |
| NCGeCl3···F− | −111.8 | -- | 1.778 | 2.819 | 0.090 | 0.096 | 0.002 | 90.2 |
“--” indicate that no data is supplied for these values.
Figure 2Typical optimized structures for (a) M+···NC-CX3···Z− (M = Li, X= F, Cl, Br; Z = F, Cl, Br), (b) Li+···NCSiCl3···F− and (c) Li+···NCGeCl3···F− triads.
MP2/aug-cc-pVTZ total interaction energy (Etotal), pair interaction energies (Eab, Ebc, Eac) and cooperative energies (Ecoop) for the model Li+···NC-TCl3···F− (T = C, Si, Ge) ternary systems. All energies are in kcal/mol. Etotal = E − (Ea + Eb + Ec) and Ecoop = Etotal − (Eab + Ebc + Eac), where E is the total energy of the triad (a···b···c), Ea is the energy of species a and Eab is the interaction energy of the dyad a···b. All energies are computed for the geometries that each species adopts in the optimized triad. The percentage contribution of Ecoop to the total interaction energy is given in brackets.
| Triads (a···b···c) |
|
|
|
|
|
|---|---|---|---|---|---|
| Li+···NCCCl3···F− | −112.5 | −35.7 | −15.0 | −47.8 | −14.0 (12%) |
| Li+···NCSiCl3···F− | −254.4 | −49.3 | −137.8 | −50.2 | −17.1 (7%) |
| Li+···NCGeCl3···F− | −236.3 | −49.4 | −121.6 | −48.6 | −16.7 (7%) |