Literature DB >> 32937111

Sequence effects on internal structure of droplets of associative polymers.

Kulveer Singh1, Yitzhak Rabin2.   

Abstract

Intrinsically disordered proteins (IDPs) can form liquid-like membraneless organelles, gels, and fibers in cells and in vitro. In this study, we propose a simple model of IDPs as associative polymers in poor solvent and explore the formation of transient liquid droplets and their transformation into solid-like aggregates. We use Langevin dynamics simulations of short polymers with two stickers placed symmetrically along their contour to study the effect of the primary sequence of these polymers on their organization inside condensed droplets. We observe that the shape, size, and number of sticker clusters inside the droplet change from a long cylindrical fiber to many compact clusters as one varies the location of stickers along the chain contour. Aging caused by the conversion of intramoleclular to intermolecular associations is observed in droplets of telechelic polymers but not for other sequences of associating polymers. The relevance of our results to condensates of IDPs is discussed.
Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 32937111      PMCID: PMC8059095          DOI: 10.1016/j.bpj.2020.08.021

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

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Authors:  Manuela López de la Paz; Luis Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

2.  Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

Authors:  Clifford P Brangwynne; Christian R Eckmann; David S Courson; Agata Rybarska; Carsten Hoege; Jöbin Gharakhani; Frank Jülicher; Anthony A Hyman
Journal:  Science       Date:  2009-05-21       Impact factor: 47.728

3.  Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.

Authors:  Clifford P Brangwynne; Timothy J Mitchison; Anthony A Hyman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

4.  Nucleation and growth of thermoreversible polymer gels.

Authors:  J R Gomez-Solano; V Blickle; C Bechinger
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-01-14

Review 5.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

6.  Dynamics of associative polymers.

Authors:  Zhijie Zhang; Quan Chen; Ralph H Colby
Journal:  Soft Matter       Date:  2018-04-25       Impact factor: 3.679

7.  Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles.

Authors:  Ming-Tzo Wei; Shana Elbaum-Garfinkle; Alex S Holehouse; Carlos Chih-Hsiung Chen; Marina Feric; Craig B Arnold; Rodney D Priestley; Rohit V Pappu; Clifford P Brangwynne
Journal:  Nat Chem       Date:  2017-06-26       Impact factor: 24.427

8.  Comparing and combining predictors of mostly disordered proteins.

Authors:  Christopher J Oldfield; Yugong Cheng; Marc S Cortese; Celeste J Brown; Vladimir N Uversky; A Keith Dunker
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

9.  Effect of Grafting on Aggregation of Intrinsically Disordered Proteins.

Authors:  Dino Osmanovic; Yitzhak Rabin
Journal:  Biophys J       Date:  2018-01-31       Impact factor: 4.033

Review 10.  Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates.

Authors:  Simon Alberti; Amy Gladfelter; Tanja Mittag
Journal:  Cell       Date:  2019-01-24       Impact factor: 41.582

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  2 in total

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Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 6.208

2.  Faces, facets, and functions of biomolecular condensates driven by multivalent proteins and nucleic acids.

Authors:  Jason D Kahn; Edward A Lemke; Rohit V Pappu
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

  2 in total

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