Literature DB >> 30682370

Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates.

Simon Alberti1, Amy Gladfelter2, Tanja Mittag3.   

Abstract

Evidence is now mounting that liquid-liquid phase separation (LLPS) underlies the formation of membraneless compartments in cells. This realization has motivated major efforts to delineate the function of such biomolecular condensates in normal cells and their roles in contexts ranging from development to age-related disease. There is great interest in understanding the underlying biophysical principles and the specific properties of biological condensates with the goal of bringing insights into a wide range of biological processes and systems. The explosion of physiological and pathological contexts involving LLPS requires clear standards for their study. Here, we propose guidelines for rigorous experimental characterization of LLPS processes in vitro and in cells, discuss the caveats of common experimental approaches, and point out experimental and theoretical gaps in the field.
Copyright © 2018. Published by Elsevier Inc.

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Year:  2019        PMID: 30682370      PMCID: PMC6445271          DOI: 10.1016/j.cell.2018.12.035

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  112 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  mRNA structure determines specificity of a polyQ-driven phase separation.

Authors:  Erin M Langdon; Yupeng Qiu; Amirhossein Ghanbari Niaki; Grace A McLaughlin; Chase A Weidmann; Therese M Gerbich; Jean A Smith; John M Crutchley; Christina M Termini; Kevin M Weeks; Sua Myong; Amy S Gladfelter
Journal:  Science       Date:  2018-04-12       Impact factor: 47.728

3.  Kinase-controlled phase transition of membraneless organelles in mitosis.

Authors:  Arpan Kumar Rai; Jia-Xuan Chen; Matthias Selbach; Lucas Pelkmans
Journal:  Nature       Date:  2018-07-04       Impact factor: 49.962

Review 4.  Prion-like low-complexity sequences: Key regulators of protein solubility and phase behavior.

Authors:  Titus M Franzmann; Simon Alberti
Journal:  J Biol Chem       Date:  2018-06-19       Impact factor: 5.157

5.  Is the nuclear refractive index lower than cytoplasm? Validation of phase measurements and implications for light scattering technologies.

Authors:  Zachary A Steelman; Will J Eldridge; Jacob B Weintraub; Adam Wax
Journal:  J Biophotonics       Date:  2017-04-18       Impact factor: 3.207

6.  Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II.

Authors:  Kathleen A Burke; Abigail M Janke; Christy L Rhine; Nicolas L Fawzi
Journal:  Mol Cell       Date:  2015-10-08       Impact factor: 17.970

7.  C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles.

Authors:  Kyung-Ha Lee; Peipei Zhang; Hong Joo Kim; Diana M Mitrea; Mohona Sarkar; Brian D Freibaum; Jaclyn Cika; Maura Coughlin; James Messing; Amandine Molliex; Brian A Maxwell; Nam Chul Kim; Jamshid Temirov; Jennifer Moore; Regina-Maria Kolaitis; Timothy I Shaw; Bing Bai; Junmin Peng; Richard W Kriwacki; J Paul Taylor
Journal:  Cell       Date:  2016-10-20       Impact factor: 41.582

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Sequence determinants of protein phase behavior from a coarse-grained model.

Authors:  Gregory L Dignon; Wenwei Zheng; Young C Kim; Robert B Best; Jeetain Mittal
Journal:  PLoS Comput Biol       Date:  2018-01-24       Impact factor: 4.475

10.  Compositional Control of Phase-Separated Cellular Bodies.

Authors:  Salman F Banani; Allyson M Rice; William B Peeples; Yuan Lin; Saumya Jain; Roy Parker; Michael K Rosen
Journal:  Cell       Date:  2016-06-30       Impact factor: 41.582

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  483 in total

Review 1.  Viral and cellular interactions during adenovirus DNA replication.

Authors:  Matthew Charman; Christin Herrmann; Matthew D Weitzman
Journal:  FEBS Lett       Date:  2019-12-17       Impact factor: 4.124

2.  A subcellular map of the human kinome.

Authors:  Haitao Zhang; Xiaolei Cao; Mei Tang; Guoxuan Zhong; Yuan Si; Haidong Li; Feifeng Zhu; Qinghua Liao; Liuju Li; Jianhui Zhao; Jia Feng; Shuaifeng Li; Chenliang Wang; Manuel Kaulich; Fangwei Wang; Liangyi Chen; Li Li; Zongping Xia; Tingbo Liang; Huasong Lu; Xin-Hua Feng; Bin Zhao
Journal:  Elife       Date:  2021-05-14       Impact factor: 8.140

3.  Assemblies of d-Peptides for Targeting Cell Nucleolus.

Authors:  Huaimin Wang; Zhaoqianqi Feng; Weiyi Tan; Bing Xu
Journal:  Bioconjug Chem       Date:  2019-09-27       Impact factor: 4.774

Review 4.  Formation of biological condensates via phase separation: Characteristics, analytical methods, and physiological implications.

Authors:  Zhe Feng; Xudong Chen; Xiandeng Wu; Mingjie Zhang
Journal:  J Biol Chem       Date:  2019-08-23       Impact factor: 5.157

5.  Regulatory mechanisms of tau protein fibrillation under the conditions of liquid-liquid phase separation.

Authors:  Solomiia Boyko; Krystyna Surewicz; Witold K Surewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-01       Impact factor: 11.205

6.  Designer protein assemblies with tunable phase diagrams in living cells.

Authors:  Meta Heidenreich; Joseph M Georgeson; Emanuele Locatelli; Lorenzo Rovigatti; Saroj Kumar Nandi; Avital Steinberg; Yotam Nadav; Eyal Shimoni; Samuel A Safran; Jonathan P K Doye; Emmanuel D Levy
Journal:  Nat Chem Biol       Date:  2020-07-13       Impact factor: 15.040

7.  Phase Separation of Toxic Dipeptide Repeat Proteins Related to C9orf72 ALS/FTD.

Authors:  Hamidreza Jafarinia; Erik van der Giessen; Patrick R Onck
Journal:  Biophys J       Date:  2020-07-16       Impact factor: 4.033

8.  Limited dishevelled/Axin oligomerization determines efficiency of Wnt/β-catenin signal transduction.

Authors:  Wei Kan; Michael D Enos; Elgin Korkmazhan; Stefan Muennich; Dong-Hua Chen; Melissa V Gammons; Mansi Vasishtha; Mariann Bienz; Alexander R Dunn; Georgios Skiniotis; William I Weis
Journal:  Elife       Date:  2020-04-16       Impact factor: 8.140

9.  Measles Virus Forms Inclusion Bodies with Properties of Liquid Organelles.

Authors:  Yuqin Zhou; Justin M Su; Charles E Samuel; Dzwokai Ma
Journal:  J Virol       Date:  2019-10-15       Impact factor: 5.103

10.  Inhibition of Axon Regeneration by Liquid-like TIAR-2 Granules.

Authors:  Matthew G Andrusiak; Panid Sharifnia; Xiaohui Lyu; Zhiping Wang; Andrea M Dickey; Zilu Wu; Andrew D Chisholm; Yishi Jin
Journal:  Neuron       Date:  2019-08-01       Impact factor: 17.173

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